Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03268 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTCAAAGAGTCGGTGCACAAGCTTGAGAAGGAATCTGGGTTTTTCTTCAACATGAAGTACTTTGAGGAAAAAGTTCAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTGTCAGGGTTTACCAAAGTTGATGATAATAGATATTCTATGAAGATATTCTTTGAAATTAGGAAACAGAAATATCTGGAAGCGCTTGATCGGCAAGACAAGGCCAAGGCTGTTGAGATATTAGTGAGTGATTTGAAAGTGTTCTCCACTTTTAACGAGGAACTATACAAGGAAATTACGCAGCTGTTGATACTTAATAATTTCAgAGAGAATGAGCAGCTATCCAAGTACGGTGACACCAAAACTGCTCGAAGCATTATGTTGATAGAGCTTAAAAAACTCATTGAAGCAAACCCACTTTTTCGTGACAAGCTTCTCTTCCCTACTCTTAAGTCATCAAGATTGCGGACCTTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAGAACCCAAGACCAAACCCAgatattaaaactttattcaCAGATCACACCTGTACACCTCCTAATGGTCCTCTGACACCTTCATCTGTCAATCTTTCTGTCACTGCTGTTGCTAAGCCTGCTGCTTATACATCACTTGGAGCTCATGGTCCATTCCCACCTGCTGCAGCATCTGCAAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCTGCTTCATCATCTGTCCAAGCAGCTGTTGTGACTGCATCATCCATACCAGTCCCACAGAATCAAGTTTCTATATTGAAACGTCCAAGAACACCTCCTGCAACTCCTGGAATGGTTGACTATCAGAATCCTGATCATGAACTAATGAAAAGGCTTCGTCCTGCTCATTCTGTGGAGGAGgttTCCTATGCTTCAGCTCGTCAAGCTTCTTGGTCGGTGGATGATCTACCAAGAACAGTGACTATGACTTTACATCAAGGAGCCTCTTTGACAAGCATGGATTTTCATCCTTCTCACAACACATTGCTTCTTGTTGGTACAAATTCTGGTGAAATTACCCTATGGGAACTTGGGTTGCGGGAGAGGTTACTTTCAAAACCATTCAAGATATGGGATATTGCAGCATGCTCATTGGCATTTGagGCAGCTGCTGTCAAAGATGCTCCAATTTCAGTCAGCCGTGTTACATGGAGTCCTGATGGAAATTTTGTGGGTGTTGCATTTACCAAACATTTGATTCACTTGTATGCATACACGGGATCAAATGAGCTAAGCCAGCGTTTGGAGATTGATGCTCATACGGGTCGTGTTAATGACTTGGCCTTTGCACATCCAAATAAACAACTATGTATTGTGACCTGTGGAGATGATAAGTTGATAAAgGTGTGGGACTTGACTGGACGAAAACTATTTAACTTTGTGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATAGATGGCAGAATAAAAGCGTGGTTGTATGATAACATGGGTTCCAGAGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTACAGCGCTGATGGAAGCAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGACTCGTTCCTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACGTATAATGGATTCAGAAAAAAATCTGCTGGCGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGGCAAATAAAGTTTTGGGATATGGATAACGTTAATCTTCTAAGTAGCACTGATGCAGAGGGTGGACTAACGAACCTTCCGCACTTGAGATTCAATAAGGAGGGAAATCTGCTTGCTGTTACAACCATGGACAATGGATTCAAGATACTTGCTAATGCTGCTGGTCTTAGATCATTAAGAGCAATTGAAACTCCAGCCTTTGAAGCATTGAGGTCGCCCTTGGAACAGTCTGGAATCAAGGTATCTGGCTCTTCTGCTGTTAACGTTAGTCCTGTCAACTGTAAATTGGAAAGAAGCTCTCCGGTCAGGCCGTCTCCAATTCTTAATGGAGTTGATCCCCCTGGTCAAAGTGCGGAAAAACCAAGGACCGTAGAAGACGTAATAGATAGAACAAAACCATGGCAACTTTCTGAAATCACAGATGCTGTCCAATGTCGGTTAGTTACAATGCCTGACAGCACAGATGCTTCCAGCAAGGTAGTTCGgcttttatatacaaattctGCTGTTGGTGTTTTGGCACTTGGATCAAATGGAATTCAGAAGCTGTGGAAGTGGGCTCGCAATGAACAGAATCCCAGCGGGAAGGCGACTGCCAGTGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATATCTCAGGTGTCAACCTTGAAGAAGCAGTTCCGTGCATTGCTCTCTCAAAGAATGACTCGTATGTTATGTCTGCCTGTGGTGGAAAAGTTTCATTATTTAACATGATGACATTCAAGGTAATGACGACATTCATGCCACCACCTCCGGCTTCTACCTTCCTAGCTTTCCACCCCCAGGATAACAACATCATAGCCATTGGAATGGAGGATTCAACCATTCACATTTATAATGTTAGAGTGGATGAGgtaaaatcaaaattgaaggGTCATCAGAAGCGAATCACTGGTTTAGCTTTTTCAACCAATCTTAACATCCTGGTTTCTTCTGGTGCTGATGCACAACTTTGTGTGTGGAGCATTGATGCATGGGAGAAGAGGAAATCGATGGCAATACAGTTATCTGCGGGAAAGGCACCTGTTGGTGATACTCGGGTTCAGTTTCACTCTGATCAAATCCGCTTATTGGTAGTCCACGAGACTCAGTTGGCAATCTATGATGCCTCCAAGATGGATCGTATTCGGCAGTGGGTTCCACAAGATGTTGTGCCTGCTCCCATATCATATGCAGCTTATTCTTGCAACAGTCAGTTGATAATTGCTACTTTCTGCGATGGTAACATTGGGGTTTTTGATGCTGATAGCTTGAGACTCAGATGCCGTATTGCTCCGTCAACATATTTATCACAGGCAGAGGCAGCTTTAAGTGGAGTGTACCCTCTTGTTGTTGCGGCACATCCACTAGAACCTAACCAATTTGCTATTGGGATGACTGATGGGTCCGTCAAAGTGATCGAACCCAGGGAATCAGAGGGTAAGTGGGGATCAACACCTCCCGTGGATAATGCTAATGCTAATGCTATTTTAAATGGTAGAACGGGATCATCATCCACGACAAGCAACCACACGCCTGATCAGCCACAGagata 3395 0.4283 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVSDLKVFSTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLTPSSVNLSVTAVAKPAAYTSLGAHGPFPPAAASANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKRPRTPPATPGMVDYQNPDHELMKRLRPAHSVEEVSYASARQASWSVDDLPRTVTMTLHQGASLTSMDFHPSHNTLLLVGTNSGEITLWELGLRERLLSKPFKIWDIAACSLAFEAAAVKDAPISVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELSQRLEIDAHTGRVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFVGHEAPVYSICPHHKENIQFIFSTAIDGRIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNLLSSTDAEGGLTNLPHLRFNKEGNLLAVTTMDNGFKILANAAGLRSLRAIETPAFEALRSPLEQSGIKVSGSSAVNVSPVNCKLERSSPVRPSPILNGVDPPGQSAEKPRTVEDVIDRTKPWQLSEITDAVQCRLVTMPDSTDASSKVVRLLYTNSAVGVLALGSNGIQKLWKWARNEQNPSGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDAWEKRKSMAIQLSAGKAPVGDTRVQFHSDQIRLLVVHETQLAIYDASKMDRIRQWVPQDVVPAPISYAAYSCNSQLIIATFCDGNIGVFDADSLRLRCRIAPSTYLSQAEAALSGVYPLVVAAHPLEPNQFAIGMTDGSVKVIEPRESEGKWGSTPPVDNANANAILNGRTGSSSTTSNHTPDQPQR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03268 1131 SMART WD40_4 903 942 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 334 373 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 483 524 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 527 570 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 438 481 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 821 857 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 992 1034 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 860 900 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 396 434 IPR001680 GO:0005515
Bva13g03268 1131 SMART WD40_4 573 613 IPR001680 GO:0005515
Bva13g03268 1131 PANTHER PROTEIN, PUTATIVE-RELATED 1 1131 - -
Bva13g03268 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 951 IPR001680 GO:0005515
Bva13g03268 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Bva13g03268 1131 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 337 437 IPR011044 -
Bva13g03268 1131 SUPERFAMILY WD40 repeat-like 966 1093 IPR036322 GO:0005515
Bva13g03268 1131 MobiDBLite consensus disorder prediction 1099 1131 - -
Bva13g03268 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Bva13g03268 1131 MobiDBLite consensus disorder prediction 703 730 - -
Bva13g03268 1131 SMART ctlh 34 92 IPR006595 -
Bva13g03268 1131 Gene3D - 311 532 IPR015943 GO:0005515
Bva13g03268 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 482 IPR001680 GO:0005515
Bva13g03268 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1131 IPR027728 GO:0006355
Bva13g03268 1131 Gene3D - 533 669 IPR015943 GO:0005515
Bva13g03268 1131 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 405 947 IPR011047 -
Bva13g03268 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 944 - -
Bva13g03268 1131 Gene3D - 827 1104 IPR015943 GO:0005515
Bva13g03268 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 622 IPR001680 GO:0005515
Bva13g03268 1131 Pfam WD domain, G-beta repeat 447 481 IPR001680 GO:0005515
Bva13g03268 1131 Pfam WD domain, G-beta repeat 909 942 IPR001680 GO:0005515
Bva13g03268 1131 SMART Lish 4 36 IPR006594 GO:0005515
Bva13g03268 1131 MobiDBLite consensus disorder prediction 1091 1131 - -
Bva13g03268 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03268 Bva-Chr13 22651941 22660834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03268 446 655 Miscellaneous Gene Families AT5G08390 24.413 5.28e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03268 - - gmx:100793575 2015.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03261 04 26373984 26382707 Bva13g03268 13 22651941 22660834 BWGD
Bva13g03268 13 22651941 22660834 Bva13g03268 13 22651941 22660834 ECH