Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03261 ATGTCGTCTTTGAGCAGAGAATTGGTATTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTCAAAGAGTCGGTGCACAAGCTTGAGAAGGAATCTGGGTTTTTCTTCAACATGAAGTACTTTGAGGAGAAAGTTCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTGTCAGGGTTTACGAAAGTTGATGATAATAGATACTCCATGAAGATATTCTTTGAAATCAGGAAACAGAAATATCTGGAAGCACTTGATCGGCAAGACAAGGCCAAAGGTGTTGAGATATTAGTGAATGATTTGAAAGTGTTCTCCACTTTTAATGAGGAATTATACAAGGAAATTACGCAGCTGCTGACCCTTAATAATTTCAGGGAGAATGAGCAATTATCCAAGTATGGTGACACCAAAACTGCTAGAAGCATTATGTTGATAGAACTTAAAAAACTCATTGAAGCGAATCCACTTTTCCGGGATAAGCTTGTTTTCCCTACTCTTAAGTCATCAAGATTGCGGACGTTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAACCCAAGGCCAAACCCAGATATTAAGACTTTATTCACTGATCACACATGTGCACTTCCTAATGGTCCTCTGGCACCTACACCTGTCAATCTTCCCATTGCTGCCGTTGCAAAGCCTGCTGCCTATACTTCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCAGCAACAGCCAATGCCAATGCTTTAGCTGGTTGGATGGCCAATGCCTCTGCTTCATCATCTGTCCAAGCGGCTGTTGTCACTGCATCTTCCATACCAGTTCCTCAGAATCAAgCAATTTCTATCTTGAAGCGACCAAGAACACCTCCAGCAACTCCTGGTATGGTTGATTATCAGAATCCCGATCATGAACAGCTAATGAAAAGGCTTCGGCCTGCTCATTCTGTAGAGGAGgttTCCTATCCTTCAGCTCGTCAAGCTTCTTGGTCAGTGGATGATCTACCAAGAACTGTGGCTATGACTTTACATCAGGGAGCCTCTGTGACAAGCATGGATTTTCATCCTTCTCATTATACATTACTTCTTGTTGGTACAAATAATGGTGAAATTACCCTCTGGGAACTTGGGTTGCGGGAGAGGTTGACCTCAAAGCCATTCAAAATATGGGATATGTCAGCATGCTCTTTGGCATTTCAGGCAGTTGCTGTCAAAGATGGACCAATTTCTGTCAGCCGTGTTACATGGAGCCCAGATGGAAATTTTGTGGGTGTTGCATTTACCAAACATTTGATTCAGTTGTATGCATACACTGGATCGAATGAGCTAAGTCAGCGTTTGGAGATTGATGCGCATACTGGTGGTGTTAATGACTTGGCCTTTGCACATCCAAATAAACAACTATGTATTGTGACCTGTGGAGATGATAAGTTGATaaagGTATGGGATTTAACTGGACGAAGACTATTTAACTTCGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCTATAGATGGCAAAATAAAGGCGTGGCTGTATGATAACATGGGCTCCAGAGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAATCAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGACTCTTTCCTGGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACGTACAATGGATTCAGAAAAAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAAAATCGTTTTTTGGCTGCAGGTGAAGATTGCCAAATAAAGTTTTGGGATATGGACAATGTTAATCTTCTAAGTAGCACTGATGCAGAGGGAGGACTAACGAACCTTCCGCGCTTGAGATTCAATAAGGAGGGAAATCTGCTTGCTGTTACTACCGTGGACAATGGATTCAAGATACTTGCTAATGCTACCGGGCTTAGATCTTTAAGAGCAATTGAAACTCCTGCCTTTGAAGCATTAAGGTCACCCATGGAATCATCTGCAATCAAGGTATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTGGAAAGGAGCTCCCCTGTCAGGCCGTCTCCAATTCTTAATGGAGTTGATCCTGCCGGTCGAAGTTTGGAGAAACCAAGAACAGTGGACGATGTAATAGACAGAACTAAACCATGGCAACTTTCTGAAATCACAGATGCTGCCCAGTGTCGGTTGGTTACATTGCCAGACAGCACAGATACGTCCAGCAAGGTAGTTCGGCTTCTATATTCAAATTCTGGTGTTGGTGTTTTGGCACTTGGTTCAAATGGAATTCAGAAGCTGTGGAAGTGGGCTCGCAATGAACAGAATCCCAGCGGAAAGGCCACTGCCAGTGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATATCTCAGGTGTCAACCTAGAAGAAGCAGTTCCCTGCATTGCACTCTCAAAGAACGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCCGCCTCTACTTTCCTAGCTTTCCATCCCCAGGATAACAACATTATAGCCATTGGAATGGAGGATTCAACCATTCACATATATAATGTTAGAGTGGATGAGGTAAAATCAAAGTTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACTAATCTTAACATCCTGGTTTCATCTGGTGCGGATGCTCAACTTTGTGTGTGGAGCATTGATACATGGGAAAAGAGGAAATATATGATGATACAGTTGCCTGGGGGAAAGACATGTACTGCCGGTGATACTCGAGTGCAGTTTCATTCTGATCAACTCCGCTTATTGGTGGTCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGTATTCGGCAGTGGGTTCCACAAGATGTTCTGCCTGCTCCCATATCATATGCAACTTATTCTTGCAACAGTCAATTAATAGTTGCTACCTTCTGCGATGGTAACACTGGGGTTTTTGATGCTGATAGCTTAAGACTGAGATGCCGTATTGCTCCAACAGCATATCTGTCACAGGCAGCTTTAAGTGGaagcCAAGCTGTGTATCCTCTAGTTGTTGCGGCACATCCACTCGAGGCTAACCAATTTGCTCTTGGGCTATCTGATGGGTCCGTCAAAGTGATCGAACCCACGGAATCAGAGGGCAAGTGGGGGTCAACTCCTCCTGTGGATAATGGTATTTTAAATGGTAGGACGGCATCGTCATCTACAACAAGCAACCACACGCCTGATCAGACACaaagata 3395 0.4324 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVNDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCALPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASSIPVPQNQAISILKRPRTPPATPGMVDYQNPDHEQLMKRLRPAHSVEEVSYPSARQASWSVDDLPRTVAMTLHQGASVTSMDFHPSHYTLLLVGTNNGEITLWELGLRERLTSKPFKIWDMSACSLAFQAVAVKDGPISVSRVTWSPDGNFVGVAFTKHLIQLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGIRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDCQIKFWDMDNVNLLSSTDAEGGLTNLPRLRFNKEGNLLAVTTVDNGFKILANATGLRSLRAIETPAFEALRSPMESSAIKVSGSSAVNVSPVNCKVERSSPVRPSPILNGVDPAGRSLEKPRTVDDVIDRTKPWQLSEITDAAQCRLVTLPDSTDTSSKVVRLLYSNSGVGVLALGSNGIQKLWKWARNEQNPSGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKYMMIQLPGGKTCTAGDTRVQFHSDQLRLLVVHETQLAIYDASKMDRIRQWVPQDVLPAPISYATYSCNSQLIVATFCDGNTGVFDADSLRLRCRIAPTAYLSQAALSGSQAVYPLVVAAHPLEANQFALGLSDGSVKVIEPTESEGKWGSTPPVDNGILNGRTASSSTTSNHTPDQTQR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03261 1131 Gene3D - 565 672 IPR015943 GO:0005515
Bva04g03261 1131 Gene3D - 300 564 IPR015943 GO:0005515
Bva04g03261 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Bva04g03261 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1131 IPR027728 GO:0006355
Bva04g03261 1131 MobiDBLite consensus disorder prediction 1108 1131 - -
Bva04g03261 1131 Gene3D - 767 1104 IPR015943 GO:0005515
Bva04g03261 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Bva04g03261 1131 SUPERFAMILY Peptidase/esterase 'gauge' domain 885 1126 - -
Bva04g03261 1131 SMART WD40_4 1001 1037 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 823 859 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 336 375 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 440 483 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 485 526 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 575 615 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 398 436 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 905 944 IPR001680 GO:0005515
Bva04g03261 1131 SMART WD40_4 862 902 IPR001680 GO:0005515
Bva04g03261 1131 PANTHER PROTEIN, PUTATIVE-RELATED 1 1131 - -
Bva04g03261 1131 SMART ctlh 34 92 IPR006595 -
Bva04g03261 1131 MobiDBLite consensus disorder prediction 705 726 - -
Bva04g03261 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Bva04g03261 1131 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Bva04g03261 1131 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Bva04g03261 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Bva04g03261 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Bva04g03261 1131 SMART Lish 4 36 IPR006594 GO:0005515
Bva04g03261 1131 MobiDBLite consensus disorder prediction 1094 1131 - -
Bva04g03261 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Bva04g03261 1131 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 414 949 IPR011047 -
Bva04g03261 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Bva04g03261 1131 SUPERFAMILY WD40 repeat-like 330 435 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03261 Bva-Chr4 26373984 26382707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03261 448 657 Miscellaneous Gene Families AT5G08390 24.413 6.36e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03261 - - gmx:100793575 2039.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03261 04 26373984 26382707 Bva13g03268 13 22651941 22660834 BWGD
Bva04g03261 04 26373984 26382707 Bva04g03261 04 26373984 26382707 ECH