Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03180 ATGAAGCTCAcggtctctcttcttcttgCGACTCTTGCTGTGGTGTTTGCCACCGCTGCTGCAGATCCTGACCCTCTTCAAGACATCTGCGTCGCCGATCTCAATTCTGAGGTGAAAGTCAACGGGTTCACCTGCAAAGACGCATCCAAAGTAAACGCCTCTGATTTCTTTTCGGATATACTAGCCAAACCCGGCGCTACAAATAACACCTTTGGGTCACTGGTCACAGGAGCCAATGTACAAAAAATCCCAGGACTCAACACTTTGGGTGTTTCTTTGTCTCGCATTGACTACGCCCCTGGCGGCCTTAACCCACCCCACACTCACCCACGTGCCACTGAGATAGTTTTTGTGCTTGAAGGTGAATTAGATGTGGGTTTCATAACCACTGCAAATGTGCTTATATCAAAGTCCATTAAGAAGGGTGAGATATTTGTGTTCCCAAAAGGGTTAGTTCACTTCCAAAAGAACAATGGGGGTGGGCCTGCTACTGTCATTGCAGCCTTCAACAGCCAATTGCCTGGTACACAGTCCATTGCCACCACCTTGTTTGCTGCCACGCCAGATGTTCCAGACAACGTATTGACAAAGGCATTCCAAGTGGGTACTAAGGAGGTTCAAAAAATCAAGTCTAGGCTTGCACCTAAGAAGTA 653 0.464 MKLTVSLLLATLAVVFATAAADPDPLQDICVADLNSEVKVNGFTCKDASKVNASDFFSDILAKPGATNNTFGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGELDVGFITTANVLISKSIKKGEIFVFPKGLVHFQKNNGGGPATVIAAFNSQLPGTQSIATTLFAATPDVPDNVLTKAFQVGTKEVQKIKSRLAPKK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03180 217 SUPERFAMILY RmlC-like cupins 22 212 IPR011051 -
Bva13g03180 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Bva13g03180 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 215 - -
Bva13g03180 217 SMART Cupin_1_3 58 207 IPR006045 -
Bva13g03180 217 CDD cupin_OxOx 22 213 - -
Bva13g03180 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Bva13g03180 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Bva13g03180 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
Bva13g03180 217 PANTHER GERMIN-LIKE PROTEIN 9 215 - -
Bva13g03180 217 Pfam Cupin 61 207 IPR006045 -
Bva13g03180 217 Gene3D Jelly Rolls 21 215 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03180 Bva-Chr13 22243448 22244867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03180 5 217 Miscellaneous Gene Families AT3G05930 55.607 5.09e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03180 - - gmx:100302722 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03192 04 26024004 26025434 Bva13g03180 13 22243448 22244867 BWGD
Bva13g03180 13 22243448 22244867 Bva13g03180 13 22243448 22244867 ECH