Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03012 ATGAAGGGGATAGTGGCTGTGCTTTTACTTTTAGCACTAATCACTGCACTAGAGAGTAAAGACGAAGAAAATGATGGATCGTGTCAATATAAAACATTGGTTGCCAGGCCTCATAGTGTGTCAATCTTGGAATTTGGGGCAGTTGGAGATGGAAAAACATTAAACACGGTTGCATTtcaaaatgcaattttttatctcaagtCCTTTGCCGATAAAGGTGGTGCTCAGCTATATGTTCCATCAGGTAGATGGCTTACCGGAAGTTTTAATCTTACCAGCCACCTAACTCTCTTCCTTGAGAAAGGAGCTATCATTCTTGGATCTCAGGATTTTGCACACTGGGGTATATTGGATGCACTTCCTTCTTATGGTAGAGGAATTGATGTTCCCTATGGTAGATATGGCAGCTTGATTAATGGACAAAACTTAACCGACGTGGTGATTACAGGTGATAATGCAACTATTGATGGCCAGGGTTCTCTTTGGTGGGAGCTGTTCAATTCTCACTCCTTAAACTACAGCAGACCACATCTTGTGGAATTTATTAGTTCTGAAAATATCATTATctcaaatttgacatttttaaattctccTGCGTGGAATATCCATCCAGTATATTGCAGAAACATTCAAATTCAGAACATAACAGCTCATGCCCCAGCTGAATCCCCTTATACTAGTGGAATAGTTCCAGATTCTTCCAAGTATGTTTGCATTGATAACAGCAATATTAGCACGGGTCATGACGCTATTGCGCTAAAGAGTGGTTGGGATGAGTACGGAGTTGCCTATGGTAAACCAAGCACGAGTGTCCGCATCAGGAGTGTTCGCCTACAATCATCATCAGGTGCTGGCCTAGCATTTGGGAGCGAGATGTCTGGAGGCATATCCAATGTAATTGTAGAACAGCTTCATGTGTTCGACTCACCTATCGGCATTGAATTCAAAACAACTAAGGGTAGAGGTGGTTATATGAAAGATATCACAGTATCAGATGCAGAACTGACGAATGTTTACTTGGCTATCATCATGACTGGTTACAGTGGTTCCCACCCAGATGACAAGTTTGATCGAGACGCTCTTCCAGTTGTTGATGGCATTACTTTAAAGAATGTGGTTGGTGCAAATGTTACTATTGCTGGGAATTTTTCTGGAATAGTTGATTCACCATTCACATCAATCTGCCTTTCAAACGTGACTCTCTCCATTAGTTCTGAAAAATCTCCTTCCTGGTTTTGTTCTAATGTAAAGGGTTCCTCTGAGAAGGTATTTCCTAAACCATGTCCTGATCTCCAGAGCTCATACTCAgagctttccttttcttgcacTTCTTCCCTATATCCACCAAATAGTTATTATATCTCAAGCTCATA 1373 0.3926 MKGIVAVLLLLALITALESKDEENDGSCQYKTLVARPHSVSILEFGAVGDGKTLNTVAFQNAIFYLKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLEKGAIILGSQDFAHWGILDALPSYGRGIDVPYGRYGSLINGQNLTDVVITGDNATIDGQGSLWWELFNSHSLNYSRPHLVEFISSENIIISNLTFLNSPAWNIHPVYCRNIQIQNITAHAPAESPYTSGIVPDSSKYVCIDNSNISTGHDAIALKSGWDEYGVAYGKPSTSVRIRSVRLQSSSGAGLAFGSEMSGGISNVIVEQLHVFDSPIGIEFKTTKGRGGYMKDITVSDAELTNVYLAIIMTGYSGSHPDDKFDRDALPVVDGITLKNVVGANVTIAGNFSGIVDSPFTSICLSNVTLSISSEKSPSWFCSNVKGSSEKVFPKPCPDLQSSYSELSFSCTSSLYPPNSYYISSS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03012 457 Gene3D - 17 424 IPR012334 -
Bva13g03012 457 SUPERFAMILY Pectin lyase-like 32 432 IPR011050 -
Bva13g03012 457 PANTHER POLYGALACTURONASE-RELATED 5 448 - -
Bva13g03012 457 Pfam Glycosyl hydrolases family 28 135 417 IPR000743 GO:0004650|GO:0005975
Bva13g03012 457 PANTHER PECTIN LYASE-RELATED 5 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03012 Bva-Chr13 21459078 21462242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03012 1 436 Glycoside Hydrolase AT3G16850 62.014 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03012 - - gmx:100787190 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03054 04 25356186 25359048 Bva13g03012 13 21459078 21462242 BWGD
Bva13g03012 13 21459078 21462242 Bva13g03012 13 21459078 21462242 ECH