Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03054 ATGCGGAGCTGGTTTTCCTATAAGCCGTCGTTTCCTCTTACCTCCCCGTTGGCTTCTTCTGTTTCGGGTCCTTCCTTTGGCCTTATATACGAAACATCGCTGCTCTATTCCCTCTTGTCCTGTTTCTTTACTTCACTTCACAGTCCAACTACTGTTCCTGCTTTCAGAAGTTTCCAGCCTGTTactgttttgaattttgttgctgtgctgaagaaaaaaaggaacatGCCAATGAAGAGGCGGCTAGTGGCTGTGCTTTTACTTTTGGCATTAAGCACTGCACTAGAGAGTAAAGGCGAAGAAAATGGTGGGTCGTGTGAATATAAAACATTGGATGCCAGGCCTCATAGCGTGTCAATCTTGGAATTTGGGGCAGTCGGAGATGGAAAAACATTAAACACGGTTGCATTTCAGAATGCGGTCTTTTATCTCATGTCCTTTGCCGACAAGGGTGCCGCTCAGCTATATGTTCCATCAGGCAGATGGCTTACCGGAAGTTTTACTCTAACCAGCCACTTAACTCTCTTCCTTGAGAAAGGAGCTACCATTATTGGATCTCGGGATTTTGAACACTGGGGTATATTGGATGCCCTTCCTTCTTATGGTAGAGGAATTGATGTTCCCTCTGGGAGATATCGTAGCTTGATTTATGGACAAAATTTAAGTGACGTGGTGATTACAGGTGATAACGCAACTATTGATGGGCAGGGTTCTGTTTGGTGGGAGCTGTTCAATTCTCACTCCTTAAATTACAGCAGACCGCATCTTGTGGAATTTGTTAGTTCTGATGATAtcattatatcaaatttgacGTTTTTAAATTCTCCTGCGTGGGATATCCATCCAGTATATTGCAGAAACGTTCAAATTCGGAACATAACAGCTTATGCCCCAGCTCAATCCCCTTACACGAGCGGAATAGTTCCAGATTCTTCCAAGTATGTGTGCATAGACAAGAGCAATATCAGCACGGGTCATGACGCCATTGTGCTCAAGAGTGGTTGGGATGAGTATGGAATTGCCTATGGCGAGCCAAGCTTGAATATCCACATCAGGGATGTTCGCCTAAAATCATCGTCGGGTGCTGGCCTGGCATTTGGGAGTGAGATGTCTGGAGGCATATCCACTGTCATTGCAGAGCACCTTCATGTGCTCGACTCGCTTATTGGTATTGAATTCAAAACAACTACGGGTAGAGGTGGTTATACGAAAGATGTCCAAGTATCAGACGCAGAACTGGCAAACGTTTACTTGGCTATCAGCATGGATGGTCACCATGGTTCCCACCCAGATGACAAATTTGATCCAGACGCTCTTCCAGTTGTTGATGGCATTACTTTTAAGAATGTGGTTGGTGCAAATGTTACTGTTGCTGGGAATTTCTCGGGACTAGTTGATTCACCATTCACATCAATCTGCCTTTCAAACATAACTTTCTCCATTAGTTCTGAAAAATCTCCTTCATGGTTTTGTTCTAATGTAAAGGGTTCGTCTGAGAAGGTGTTTCCCAAACCGTGTCCTGATCTCCAGAGCTCATACTCAGTTTTCCTCTTCTTGCACTTCTTGGCTATATA 1574 0.4282 MRSWFSYKPSFPLTSPLASSVSGPSFGLIYETSLLYSLLSCFFTSLHSPTTVPAFRSFQPVTVLNFVAVLKKKRNMPMKRRLVAVLLLLALSTALESKGEENGGSCEYKTLDARPHSVSILEFGAVGDGKTLNTVAFQNAVFYLMSFADKGAAQLYVPSGRWLTGSFTLTSHLTLFLEKGATIIGSRDFEHWGILDALPSYGRGIDVPSGRYRSLIYGQNLSDVVITGDNATIDGQGSVWWELFNSHSLNYSRPHLVEFVSSDDIIISNLTFLNSPAWDIHPVYCRNVQIRNITAYAPAQSPYTSGIVPDSSKYVCIDKSNISTGHDAIVLKSGWDEYGIAYGEPSLNIHIRDVRLKSSSGAGLAFGSEMSGGISTVIAEHLHVLDSLIGIEFKTTTGRGGYTKDVQVSDAELANVYLAISMDGHHGSHPDDKFDPDALPVVDGITFKNVVGANVTVAGNFSGLVDSPFTSICLSNITFSISSEKSPSWFCSNVKGSSEKVFPKPCPDLQSSYSVFLFLHFLAI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03054 524 Gene3D - 99 502 IPR012334 -
Bva04g03054 524 PANTHER POLYGALACTURONASE-RELATED 83 516 - -
Bva04g03054 524 PANTHER PECTIN LYASE-RELATED 83 516 - -
Bva04g03054 524 Pfam Glycosyl hydrolases family 28 152 495 IPR000743 GO:0004650|GO:0005975
Bva04g03054 524 SUPERFAMILY Pectin lyase-like 111 509 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03054 Bva-Chr4 25356186 25359048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03054 83 514 Glycoside Hydrolase AT3G16850 61.894 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03054 - - gmx:100801823 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03054 04 25356186 25359048 Bva13g03012 13 21459078 21462242 BWGD