Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02396 ATGGGAAAGCTAACCATCATGGCCCTCCAAAGGCATTATCTTCTCccattcttcttcatcattatttcttttgttgcttCTCGTTGCACTAATTTGCAACAAGAGGACCCACTTTATCTAAGTGTTGATGATTTATCTTCCAATGATGATGGCGGGACATTCAAGAACTTGATCAAACAGAGCACAGATGTTTTGACATTGAAGAGTTTTGGCAAGTTAGGTAACAAATCTTCTTCACTCAAAACGGTCAATGTCGATGATTATGGAGCTGAAGGAGATAGTAAAACTGATGATACAAAGGCGTTCGAGAAGGCTTGGGAAGAAGCATGTTCTTCTGAGGAACCAGTTAAGCTTGTGGTGCCTGAGAAGAGTTATCTACTAATGCCAACAAGATTCTCTGGCCCATGCGAATCTAACATTGATGTTCAGatttctgGCTGCCTTGAAGCATCGGATGACCCATCAGATTACAGCGAAGACCGCTATCACTGGATTATTTTTGATGgtattgaaaatttatcagTTCAAGGTGGTGGAACCATTCATGGAAATGGAAACAGATGGTGGAAAAACTCATGCAAAAGGAGTAAAAAGAAGTCTTGCAAGCATGCCCCTACGGCTGTGACTTTCTATAAGTGTAAGGATTTGTTAGTTCGAAACTTGACCTTCAAAGATGCCCAGCAAATGCATGTTTCATTTCAGCACAGCACCAACGTTAAAGTTTCTGGTCTCACGGTGACTGCACCTGGGGATAGCCCTAACACCGATGGAATTCATGTCACAAATACCGAAAACATCCAAATCTCAAGCTCCACTATTGCAACTGGAGATGATTGCATATCAATTGTAAGTGGATCCAAGAATGTACAAGCCACAAACATAACCTGCGGACCAGGTCATGGTATCAGCATCGGAAGCTTAGGGAAGGGAAAGTCCAAGGACATTGTTTCAGATGTAACAGTGGATGGAGCTAAGTTTTCTGGAACTTCAAATGGAGTTAGAATTAAGACATGGCAGgGAGGGTCAGGAAGCGTAACAAATATCAAGTTTCAGAACATTGAAATGGACAATGCAACCAACCCCATAATAATAAACCAGTACTACTGTGACCAAAAGAAGCCATGCAAAGAAGAGCACTCCGCGGTTCAGATTATGAATGTGACATACCGGAACATAAAAGGAACAAGTGCTCATGATGTTGCTGTGAAGTTTGATTGCAGCAAGCACTTTCCATGTCAGGGAATAGTGTTGCAGGAAATAGGCCTGCAACGTCAAGGAGGAGAAGCTGCAGAAGCTTATTGTAAGAATGTTCAGTTCTCTTACATTGGAGACGTTTTCCCTCGCTGCCCAGAGGGAGGATTAAAGATATTCTTGCAGACAATACTCTCATGGTTTGACCATAAAGTGCCATGCAAGATTCAATG 1424 0.408 MGKLTIMALQRHYLLPFFFIIISFVASRCTNLQQEDPLYLSVDDLSSNDDGGTFKNLIKQSTDVLTLKSFGKLGNKSSSLKTVNVDDYGAEGDSKTDDTKAFEKAWEEACSSEEPVKLVVPEKSYLLMPTRFSGPCESNIDVQISGCLEASDDPSDYSEDRYHWIIFDGIENLSVQGGGTIHGNGNRWWKNSCKRSKKKSCKHAPTAVTFYKCKDLLVRNLTFKDAQQMHVSFQHSTNVKVSGLTVTAPGDSPNTDGIHVTNTENIQISSSTIATGDDCISIVSGSKNVQATNITCGPGHGISIGSLGKGKSKDIVSDVTVDGAKFSGTSNGVRIKTWQGGSGSVTNIKFQNIEMDNATNPIIINQYYCDQKKPCKEEHSAVQIMNVTYRNIKGTSAHDVAVKFDCSKHFPCQGIVLQEIGLQRQGGEAAEAYCKNVQFSYIGDVFPRCPEGGLKIFLQTILSWFDHKVPCKIQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02396 474 SUPERFAMILY Pectin lyase-like 80 451 IPR011050 -
Bva13g02396 474 Pfam Glycosyl hydrolases family 28 110 438 IPR000743 GO:0004650|GO:0005975
Bva13g02396 474 PANTHER - 15 455 - -
Bva13g02396 474 PANTHER ENDO POLYGALACTURONASE 15 455 - -
Bva13g02396 474 SMART pbh1 236 262 IPR006626 -
Bva13g02396 474 SMART pbh1 345 366 IPR006626 -
Bva13g02396 474 SMART pbh1 263 284 IPR006626 -
Bva13g02396 474 SMART pbh1 316 337 IPR006626 -
Bva13g02396 474 Gene3D - 72 445 IPR012334 -
Bva13g02396 474 ProSitePatterns Polygalacturonase active site. 293 306 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02396 Bva-Chr13 18136013 18138629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02396 57 449 Glycoside Hydrolase AT2G41850 57.071 3.19e-148 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02396 K01184 - gmx:100816917 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02396 13 18136013 18138629 Bva04g02187 04 21033734 21036317 BWGD
Bva13g02396 13 18136013 18138629 Bva13g02396 13 18136013 18138629 ECH