Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02187 ATGGCCCTCCAAAGGCCTAGTCTTCTCCCATTCTTCTTCATcgtcatttcttttgttgcttGTTATTGCACTGGTTTGCAACAAGAGGACCCACTTTCTTTGACTGTTGATGATTTATCTTCGGTTGATGATGGTGGGACATTCAAGAACTTGATCAAACAGAGCACAGATGTTTTGAGCTTGAAGAGTTTTGACAAGTTGGGTAGCAAAGCTTCTTCACTTAAAACGGTCAATGTCATTGATTATGGAGCTAAAGGGGATGGTAGAACTGACGATTCAGAGGCATTTGAGAAGGCTTGGGAAGTAGCATGTTCCTCTGGGGGATCGGTTAAGCTTGTGGTGCCAGAGAATCGTTATCTGCTGATGCCAATCAGATTCTCTGGCCCATGCAAATCTACCATTAGCATTCAGaTTTCGGGCACCCTTGAAGCATCAGCTGACCCATCAGATTACAGCAAAGACCGCAATCACTGGATTATCTTTGATAGCGTTGAAAGTTTATCAGTTCAAGGTGGTGGAACCATTAATGGAAATGGAAACATATGGTGGGAAAACTCATgcaaaaggaacaaaaataatGCTGTGACTTTCTATAAGTGTACGGATTTGTTAGTTCAGGACTTGACCATAACAAATTCCCAGCAAATCCATGTTTCTTTCCAGGACAGCACCAACGTTAAGGTGTCTGGTCTCACGGTGACTGCACCTGGGAATAGCCCTAATACCGATGGAATTCATGTCACAAATACTCAAAACATCCAAATCTCAAGCTCCGTTATTGGAACTGGAGATGATTGTATATCAATTGTAAGTGGATCCGGGAATGTACAAGCCACTGACATAACCTGTGGACCAGGTCATGGTATCAGCATCGGAAGCTTAGGGAGGGGACAGTCCAAGGAATTTGTTTCAGCAGTAACAGTGAATGGAGCTAAGTTTTCTGGAACTTCAAATGGAGTTAGAATTAAGACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAAGTTTCAGAACATTCAAATGGACAATGTGACCAACCCCATAATAATAGACCAGAACTACTGTGACCAGAAGAAGCCATGCAAACAAgagCGCTCGGCGGTTCAGATCAGGAACGTGATATACCAGAACATAAAAGGAACAAGTGCTTCTGATGTTGCTGTGAAGTTTGATTGCAACCAGAACTTTCCATGTCAAGGAATAGTGTTGCAGAACATAGGCCTGCAACGCCAAGGAGGAGAAGCTGCTGAATCTTATTGTAAGAATGTTAAGTTGTCCAACATTGGAGACGTTTTCCCTCGCTGCTCTTA 1313 0.4212 MALQRPSLLPFFFIVISFVACYCTGLQQEDPLSLTVDDLSSVDDGGTFKNLIKQSTDVLSLKSFDKLGSKASSLKTVNVIDYGAKGDGRTDDSEAFEKAWEVACSSGGSVKLVVPENRYLLMPIRFSGPCKSTISIQISGTLEASADPSDYSKDRNHWIIFDSVESLSVQGGGTINGNGNIWWENSCKRNKNNAVTFYKCTDLLVQDLTITNSQQIHVSFQDSTNVKVSGLTVTAPGNSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSGNVQATDITCGPGHGISIGSLGRGQSKEFVSAVTVNGAKFSGTSNGVRIKTWQGGSGSASNIKFQNIQMDNVTNPIIIDQNYCDQKKPCKQERSAVQIRNVIYQNIKGTSASDVAVKFDCNQNFPCQGIVLQNIGLQRQGGEAAESYCKNVKLSNIGDVFPRCS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02187 437 PANTHER ENDO POLYGALACTURONASE 9 436 - -
Bva04g02187 437 PANTHER - 9 436 - -
Bva04g02187 437 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
Bva04g02187 437 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Bva04g02187 437 SUPERFAMILY Pectin lyase-like 74 436 IPR011050 -
Bva04g02187 437 Pfam Glycosyl hydrolases family 28 104 425 IPR000743 GO:0004650|GO:0005975
Bva04g02187 437 Gene3D - 66 432 IPR012334 -
Bva04g02187 437 SMART pbh1 200 220 IPR006626 -
Bva04g02187 437 SMART pbh1 223 249 IPR006626 -
Bva04g02187 437 SMART pbh1 303 324 IPR006626 -
Bva04g02187 437 SMART pbh1 332 353 IPR006626 -
Bva04g02187 437 SMART pbh1 250 271 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02187 Bva-Chr4 21033734 21036317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02187 51 436 Glycoside Hydrolase AT2G41850 58.081 3.49e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02187 K01184 - gmx:100816917 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02396 13 18136013 18138629 Bva04g02187 04 21033734 21036317 BWGD
Bva04g02187 04 21033734 21036317 Bva04g02187 04 21033734 21036317 ECH