Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01975 atgGATGCTGGAAAGAGTTTGTTTTGTTCATCTGCATCGCTACCTCCAAGAACCCACCACAGGAGCGGTtttccttcatcttcttcGCCTTCTTCTACTTCAGTTTTGATGTTTCATGATCAAGCTGTTGCTGCAATTACCTTTAAGTCTCCTAGTTTTGCGGTCCATAATTTGCCTACCTCAGTTTTTCTACAAGAGCAGCGTGATGAGTATAAGACTCTACTACACATGTACAAGGAGGATAAGACATCCCAGGCAACATTAAATACGAGGCAGATGGATATGGCCTCAGTTGATAAAGAAAGTAGCCCTGGCAATGCTGATCATTTGGAGCATGACTTTAAGCAGCAGTTCCATCTCTGGCCTCATTTACGGAACTTACTGACTTCTTTACCGACTGAGGAAACTGCAGCATCTTCAACTCTGCATACTGATACCATTGACTCGGAGAATCTTGTAGATGGTGAACAATGGAATGCTGTTGTCCTTGCTAAGCAAGCTTTGTCTGCCTCAAAACAAGCTCTCTCAGTAGCTGAAGACTTGAAATCAACCAAAGCTGATATTGATGATGATTCACTCCCTTTGGGCCTGGCCTCCACGAGTTTGGCTGACTCTTCACTTGCAAGGAATAAAACTGTGAGGTCAACGCGGCTTCGAGAGAGACAATCTAAGAAGAGAAAGGTACCAAAgtcaaaatttcaagatgatGAAAGTTATCTtgcaataaaggaaaatgcCCGGGAAAAGTTACATCTAGAGAAAAAGACTAATGAAGGTGTTGATCAAAGTGACCCCCTGCGCTTGTTCTTGTGGGGTCCTGAAACAAAGCAGCTATTGACTCTTGAAGAAGAGTCTCAATTGATTACTCAGCTACAGGATCTATTGAGATTGGAGAGAGTGAAGAGCAGGCTTCAATCCCAATTTGGCAGGGAACCAACTTTGACTGAATGGGCTGAAGGAGTGGGGCTTAGTCGTCTAGACCTGCGGTCACAGCTTCATTCTGGTAACGCCAGAAGGGAAAAGCTGATTAATGCAAATTTACGCTTGGTAGTTCACATTGCAAAACATTATCAGGGGCGTGGTCTGAGCCTACAGGATTTATTGCAGGAGGGAAGTATGGGTCTTATGAAGAGTGTAGAAAAGTTTAAACCCCAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCAAACTATAAGGAAGGCCATATTTCAACATTCCAGGACAATCCGTCTCCCGGAGAATGTATATACAGTTTTGGGTAAGGTAATGGAGGCAAAGAAATTGTACATTCAAGAAGGAAATCTTCGCCCCACCAAAGAAGAATTGGCAAGAAGGGTCGGAATCACAGTCGACAAGCTTGAGAAGTTGCTATTTGTTGCGCGAGTACCAGTTTCGATGCAGCAAACTGTGTGGGCAGACCAAAATACCACTTTCCAGGAGGTTACTGCAGACTCTGCAATCGAGATCCCAGAGTTGAGTGTTGCAAAGCAGCTGATGAGGCGACATGTGCGAAGCCTCCTAAGTATCTTAAGCCCAAAAGAAAGGAGGATAATTAGGCTAAGGTTTGGCATTGAGGACGGTGAACCAAAATCATTATCAGCAATTGGAGATGTGTTTGGTTTGTCCAAGGAACGGGTCCGGCAGCTGGAGAGTCGAGCATTATACAAGCTCAAGCAGTGCCTTGCCAGCCAAGGACTTGATGCATATGTAGACCTTCTTGTATA 1736 0.4332 MDAGKSLFCSSASLPPRTHHRSGFPSSSSPSSTSVLMFHDQAVAAITFKSPSFAVHNLPTSVFLQEQRDEYKTLLHMYKEDKTSQATLNTRQMDMASVDKESSPGNADHLEHDFKQQFHLWPHLRNLLTSLPTEETAASSTLHTDTIDSENLVDGEQWNAVVLAKQALSASKQALSVAEDLKSTKADIDDDSLPLGLASTSLADSSLARNKTVRSTRLRERQSKKRKVPKSKFQDDESYLAIKENAREKLHLEKKTNEGVDQSDPLRLFLWGPETKQLLTLEEESQLITQLQDLLRLERVKSRLQSQFGREPTLTEWAEGVGLSRLDLRSQLHSGNARREKLINANLRLVVHIAKHYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTVLGKVMEAKKLYIQEGNLRPTKEELARRVGITVDKLEKLLFVARVPVSMQQTVWADQNTTFQEVTADSAIEIPELSVAKQLMRRHVRSLLSILSPKERRIIRLRFGIEDGEPKSLSAIGDVFGLSKERVRQLESRALYKLKQCLASQGLDAYVDLLV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01975 578 PRINTS Major sigma-70 factor signature 535 550 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 PRINTS Major sigma-70 factor signature 390 398 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 PRINTS Major sigma-70 factor signature 550 561 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 PRINTS Major sigma-70 factor signature 514 526 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 PRINTS Major sigma-70 factor signature 366 379 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 MobiDBLite consensus disorder prediction 11 31 - -
Bva13g01975 578 CDD Sigma70_r4 504 562 - -
Bva13g01975 578 Gene3D - 415 492 IPR036388 -
Bva13g01975 578 PIRSF Sigma_factor_SigC 1 578 IPR016262 -
Bva13g01975 578 Pfam Sigma-70 region 3 423 496 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 Gene3D - 160 411 - -
Bva13g01975 578 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 415 488 IPR013324 -
Bva13g01975 578 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 339 565 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 Pfam Sigma-70 region 2 342 411 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 Pfam Sigma-70, region 4 510 563 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 475 574 IPR013324 -
Bva13g01975 578 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 5 578 - -
Bva13g01975 578 MobiDBLite consensus disorder prediction 208 232 - -
Bva13g01975 578 MobiDBLite consensus disorder prediction 10 31 - -
Bva13g01975 578 ProSitePatterns Sigma-70 factors family signature 1. 366 379 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva13g01975 578 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 5 578 - -
Bva13g01975 578 Gene3D - 497 577 IPR036388 -
Bva13g01975 578 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 262 412 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01975 Bva-Chr13 15892469 15896642 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01975 - - gmx:100778636 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01975 13 15892469 15896642 Bva04g02557 04 22950175 22956355 BWGD
Bva13g01975 13 15892469 15896642 Bva13g01975 13 15892469 15896642 ECH