Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02557 ATGGAAGCTGGAAAGAGCTTGTTTTGTTCATCTGCACCGCTTCCACCAAGAACCCACCACCGGAGTGTacttccttcattttcttcaccttcttctACTTCAGTTTTGATTATTCATGAACAAGCTGTTCCTGCAGTTACCTTTAAGTCTCCTAATTTTGCGGCCCGGAATTCACCTACCTCAGTTTCTTTAAAGGAGCAGCGCAAGGAATATAAGATTCTACTGGGAATGTACAAGGCGGATAAGACATCCCAGGCAACATTAAATACGAGGCAAATGGATATGGCTTCAgttgatgaagaaaataacCTTGGCAGTGTTGATCATTTGGCACATGACTTTAGGCAGCAGTTGCATCTTTGGCCTCATTTACAGAACttATTGCCTTCGTTACAGACTGAGGAAGTTGCAGCTTCTTCAATGCTGCTGCCTGTTACAGACTCAGAGAAGATTGTAGACTCAAAACAACCTGTGTCAGTAGCTGAAGGCTTGAAGTTAACCAAaactgatgatgatgattcaCTCCATTTGCTCCTGGGCTCCACAAGTTTGGCTGACTCTTCACTTGGAAGGATTAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACAATCTAGGAAGAGAAAAgtaccaaaatcaaaatttcaaggTAGTGAAAGTTATATTGCAAAAAAGGCTGATGCCCAGGGAAGGCTACatgcagaaaaaaagaaaaacaaaggttTTGATCAAAATGACCCCCTACGCTTATTCTTGCGGGGTGCTGGGACACAGCAACGTTTGACTCTTGAAGAAGAGTTTCAATTGATTACTCGGCTACAGGATCTATTGAGATTGGAAAAAGTAAAGAGCAGGCTTCAATCCCAATTTGGCAGGAAACCAACTTTGGCTGAATGGGCTGAAGGAGTGGGGCTTAGCTGTCAAGTCCTGCAGACACAGCTTCATTCTGGTAAAACCAGCCGGGAAAAGCTGATTAATGCACATTTACGCATGGTAGTTCACATTGCAAAACATTATCAGGGGCGTGGTCTCAGCCTTCAGGATTTACTGCAGGAGGGAAGTATGGGTCTTATTAGGAGTGTAGAAAAGTTTAAGGCCCAAGCTGATTGCCGGTTTGGCTCTTATGCATACTGGTGGATCAGACAAACCATAAGGATGGCCATATTTCAACATTCCAGGACACTCCGTCTGCCGGTGAATGTGGCTACCGATTTGGGCAAGGTAATGAAggcaaaaaaattgtacattCAGGAAGGAAATCTTCACCCCACCAAAGAAGAATTGACAAGAAGGGTAGGAGTCACGGTTGACCAGCTTGAGAAGTTGCTATTTGCTGCGCGAATACCACTTTCGATGCAACAGACTGTGTGGGCAGACGAAGATACCACTTTCCagGAGATTACTGCAGACCCAGCAATTGAGACCCCAGAGTTGAGTGTTACAAAACAGATGATGAGGCGGCATGTGCGCAACCTCTTAAGTATCTTAACCCCAAAAGAAAGGAGGTTAATTAGGCTAAGGTTTGGTATGGAGGATGGTCAACCGAAAACGTTATCAGGAATTGGAGAAGTGTTTGGCGTGGGCAAGGAACGAGCCCGACAGTTGGAGAGCCGAGCATTATGCAAGCTCAAGCGGTGCCTTGTTAGCCAAGGACTTGATGCATTTACTGCTGTATGGGGGGAAATCAGGAGGATTACACCATCAAATTGCCAAGAGTCATTCATGGCAATGAATGATAGCAACACAAGCCACAGTGCTaatcagcagcagcagcagcagagtTGCGATCCTTGCAAGTCTTTTGGGCAGAAGTGTAGCCACCTGGTGAAGAAGCAGAGAGCAAAATTCTACATTCTTCGCCGTTGCATAGCCATGCTTCTGTGCTGGCATGAACGTGGTGAGCACTA 1907 0.4221 MEAGKSLFCSSAPLPPRTHHRSVLPSFSSPSSTSVLIIHEQAVPAVTFKSPNFAARNSPTSVSLKEQRKEYKILLGMYKADKTSQATLNTRQMDMASVDEENNLGSVDHLAHDFRQQLHLWPHLQNLLPSLQTEEVAASSMLLPVTDSEKIVDSKQPVSVAEGLKLTKTDDDDSLHLLLGSTSLADSSLGRIKTVRSTRLLERQSRKRKVPKSKFQGSESYIAKKADAQGRLHAEKKKNKGFDQNDPLRLFLRGAGTQQRLTLEEEFQLITRLQDLLRLEKVKSRLQSQFGRKPTLAEWAEGVGLSCQVLQTQLHSGKTSREKLINAHLRMVVHIAKHYQGRGLSLQDLLQEGSMGLIRSVEKFKAQADCRFGSYAYWWIRQTIRMAIFQHSRTLRLPVNVATDLGKVMKAKKLYIQEGNLHPTKEELTRRVGVTVDQLEKLLFAARIPLSMQQTVWADEDTTFQEITADPAIETPELSVTKQMMRRHVRNLLSILTPKERRLIRLRFGMEDGQPKTLSGIGEVFGVGKERARQLESRALCKLKRCLVSQGLDAFTAVWGEIRRITPSNCQESFMAMNDSNTSHSANQQQQQQSCDPCKSFGQKCSHLVKKQRAKFYILRRCIAMLLCWHERGEH 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02557 635 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 244 394 IPR013325 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 MobiDBLite consensus disorder prediction 1 25 - -
Bva04g02557 635 Gene3D - 397 474 IPR036388 -
Bva04g02557 635 ProSitePatterns Sigma-70 factors family signature 1. 348 361 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 Pfam DVL family 610 628 IPR012552 GO:0008285
Bva04g02557 635 Pfam Sigma-70 region 3 405 478 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 Gene3D - 191 393 - -
Bva04g02557 635 Pfam Sigma-70 region 2 324 393 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 397 470 IPR013324 -
Bva04g02557 635 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 320 547 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 Pfam Sigma-70, region 4 492 544 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 Gene3D - 479 561 IPR036388 -
Bva04g02557 635 CDD Sigma70_r4 486 544 - -
Bva04g02557 635 PRINTS Major sigma-70 factor signature 372 380 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 PRINTS Major sigma-70 factor signature 496 508 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 PRINTS Major sigma-70 factor signature 517 532 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 PRINTS Major sigma-70 factor signature 532 543 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 PRINTS Major sigma-70 factor signature 348 361 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva04g02557 635 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 457 554 IPR013324 -
Bva04g02557 635 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 5 556 - -
Bva04g02557 635 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 5 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02557 Bva-Chr4 22950175 22956355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02557 - - gmx:100778636 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01975 13 15892469 15896642 Bva04g02557 04 22950175 22956355 BWGD
Bva04g02557 04 22950175 22956355 Bva04g02557 04 22950175 22956355 ECH