Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01827 ATGGTGGGAATAATATCTTTGGTAACAGGAAGGCCTGGTTCTAGTGGGTTTGGATCAGCTTCAACTGCAGAGCAGGTTACTGAAGGAATTGATGCCAGCAATCTCACTGCCATTATCACAGGAGGAGCAAGTGGCATTGGATTGGAAACTGCAAGAGTGTTGGCTCTCCGGAAGGCTCATGTCTTCATTGCTGCGAGGAACATGGAGGCTGCAAAGGAGGCTAAACAGCTTATTCTAGAGGAAAATGAGTCTGCAAGAATCGATATACTTCAACTGGATCTCTGCTCAGTCAAGTCTATAAGAGCATTTGTTAGCAACTTCAATGCTCTTAATCTTCCTCTCAACATTTTGATAAACAATGCTGGTGTCATGTTTTGCCCCTTCAACCTCTCGGAGGATGGGATTGAGATGCAGTTTGCCACAAACCATCTCGgccattttcttttgacaaacCTTCTTCTTGATAAGATGAAGCAAACGGCAAAAGATAGTGGAATTGAGGGCAGGATTGTGAATCTGTCTTCAATTGCCCACACCTACACCTATGAAGAGGGGATTCGATTTGATAAACTCAATGACCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAGTCCAAGTTAGCCAACATATTACACGCAAATGAGCTTTCACGTCGCCTCAAGgAAGAGGGTGTGAACATCACAGCCAACTCAGTCCACCCAGGAGTGATAATGACTCCCCTCATGAGACATTCGTCCTTCCTCATGCATCTTCTGAAGATGTTCACCTTTTACATATGGAAGAATGTCCCACAgGGAGCAGCCACCACATGCTATGTTGCGCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTCTGGATTGCAATGAGTTTACACCGAGTGCTTTTGCCCAAAATGATCTGTTGGGTAGGAAACTCTGGGATTTTAGCAACAAGTTGATCAATTCATTGCCAAAAGCTTG 971 0.4367 MVGIISLVTGRPGSSGFGSASTAEQVTEGIDASNLTAIITGGASGIGLETARVLALRKAHVFIAARNMEAAKEAKQLILEENESARIDILQLDLCSVKSIRAFVSNFNALNLPLNILINNAGVMFCPFNLSEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKDSGIEGRIVNLSSIAHTYTYEEGIRFDKLNDQIGYSDKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSFLMHLLKMFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFLDCNEFTPSAFAQNDLLGRKLWDFSNKLINSLPKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01827 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Bva13g01827 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Bva13g01827 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Bva13g01827 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Bva13g01827 323 Gene3D - 23 320 - -
Bva13g01827 323 Coils Coil 68 88 - -
Bva13g01827 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Bva13g01827 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Bva13g01827 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Bva13g01827 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Bva13g01827 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Bva13g01827 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Bva13g01827 323 PANTHER RETINOL DEHYDROGENASE 3 319 - -
Bva13g01827 323 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01827 Bva-Chr13 15106013 15109062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01827 17 296 Acyl Lipid Metabolism Gene Families AT3G46170 24.746 8.87e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01827 K11153 - gmx:100807056 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02687 04 23557916 23561800 Bva13g01827 13 15106013 15109062 BWGD
Bva13g01827 13 15106013 15109062 Bva13g01827 13 15106013 15109062 ECH