Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02687 ATGGTGGGAATCATATCTTTGGTAACAGGTAGGCCTGGTCCTAGTGGGTTCGGATCAGCTTCAACTGCAGAGCAGGTAACTGAAGGAATTGATGCCAGCAATCTTACTGCAATTATCACAGGAGGAGCAAGTGGCATTGGGTTGGAGACTGCAAGAGTGTTGGCTCTCCGCAAGGCTCATGTCATCATTGCAGCGAGGAACATGGAGGCTGCAAAGGAGGCTAAACAGCTTATTCTAGCGGAAAATGAGTCTCCAAGAGTTGATATAATGCAGCTGGATCTCTGCTCACTGAAGTCTATAAGAGCATTTGTTGACAACTTCAACGCTCTTAATCTTCCTCTAAACATTTTGATAAACAATGCTGGTGTCATGTTTTGCCCATTCCAGCTCTCGGAGGATGGGGTTGAGATGCAGTTTGCCACAAACCATCTTGGTCATTTCCACTTGACAAACCTTCTTCTTGATAAAATGAAGCAAACAGCAAAAGATAGTGGAATTGAAGGCAGGATTGTGAATCTGTCTTCAATTGCCCATACCTACACTTATAAAGGGGGGATCCGTTTTGATAAACTCAATGACCCAAATGGTTATTCTGACAAGAAGGCTTATGGGCAGTCCAAGTTAGCCAACATATTACACGCAAATGAGCTTTCTCGTCGCCTCAAGGAAAAGGATGTAAACATTACAGCCAACTCTGTCCACCCTGGTGTGATAATGACTCCCCTCATGAGACATTCTTCCTTACTTATGAATTTTCTGAAGATGTTCACCTTTTACATATGGAAGAATGTCCCACAGGGAGCAGCCACCACATGCTATGTTGCGCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTCTGGATTGCAACGAGTTTACACCAAGTGCATTGGCCCAAAAAGATATGTTAGGAAGGAAATTATGGGATTTTAGCAACAAGTTGATCAATTCAATATCAAAAGCTTG 971 0.4346 MVGIISLVTGRPGPSGFGSASTAEQVTEGIDASNLTAIITGGASGIGLETARVLALRKAHVIIAARNMEAAKEAKQLILAENESPRVDIMQLDLCSLKSIRAFVDNFNALNLPLNILINNAGVMFCPFQLSEDGVEMQFATNHLGHFHLTNLLLDKMKQTAKDSGIEGRIVNLSSIAHTYTYKGGIRFDKLNDPNGYSDKKAYGQSKLANILHANELSRRLKEKDVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFLDCNEFTPSALAQKDMLGRKLWDFSNKLINSISKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02687 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
Bva04g02687 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Bva04g02687 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Bva04g02687 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Bva04g02687 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Bva04g02687 323 Gene3D - 25 320 - -
Bva04g02687 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Bva04g02687 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Bva04g02687 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Bva04g02687 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Bva04g02687 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Bva04g02687 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Bva04g02687 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02687 Bva-Chr4 23557916 23561800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02687 35 242 Miscellaneous Gene Families AT2G29150 27.700 3.07e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02687 K11153 - gmx:100807056 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02687 04 23557916 23561800 Bva13g01827 13 15106013 15109062 BWGD
Bva04g02687 04 23557916 23561800 Bva04g02687 04 23557916 23561800 ECH