Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01576 ATGGAATTCTTCATGTGGTGCTATTTCACTCTCATTCTTAGCTGTGCTCTGCTCATTGTCACTCCTGGagGTGTTTTGGGTGCTACCTTTACATTTGTAAACAGATGCGAGTACACAGTGTGGCCGGGTATTCTTGCAAATGCCGGCAGCCCGAAGCTCGACAGTACCGGATTCGAGCTCCCAAAAGACACTTCGCGGCCATTTCAAGCACCGACCGGGTGGTCTGGCCGGTTCTGGGGTCGAACGGGTTGTGATTTCGACGGATCAGGTTCTGGGTCATGTCTCACCGGCGACTGCGGGTCCGGTCAGATCGAGTGCAATGGTGCCGGAGCAGCACCACCTGCCACTCTCGCCGAGTTCACTCTCGGCACCGGCGGCCAAGACTTCTACGACGTCAGCCTCGTCGACGGCTATAACCTTCCAATGGTCGTGGAAGGGACCGGCGGGACGGGACTCTGCGCTTCGACTGGGTGCACCTCTGATCTGAACCAGCAATGCCCAAAAGAGTTGAAAGCAAGAAACGGAGACGCGTGCAAGAGCGCGTGCGAAGCTTTTGGTCGCCCCGAGTACTGTTGCAGCGGCGCGTATGGTTCACCAGCGACATGTCGGCCGTCTGTATATTCAGAGATGTTCAAAGCTGCATGCCCCAAGTCGTATAGCTACGCCTACGATGATGCTTCGAGCACATTCACTTGTGCCGGTGCTGATTATACGGTGACGTTTTGTCCATCTTCCCCAAGTCAGAAATCTTCAAGAGATCCCGATCCcgatcccaatcccacgcccACAAcctcaacaacaacaacatcatcatcatcaggACAAGGGTCAGTGGCAGGGACAGGGTTAGAAACGGGTACGGGTAAAGGTATGGGTTTGGGCACGGACCCTAGCCTCGGGTATTCGGTTACAGGTTCAGGGTCAAGTTCAGGATCCAGAGAGACCATGCTAGCAGATGGGTCATACTTGGCTGATTTAGCCATGGGAGACTCAGCTAGTAGGAGAGTGTCACTTTCCGTTCTGCAATCTATGTTTACTGAGATTTCTGCTGCtgctcttttcctttttctttctctgctgtA 1082 0.5009 MEFFMWCYFTLILSCALLIVTPGGVLGATFTFVNRCEYTVWPGILANAGSPKLDSTGFELPKDTSRPFQAPTGWSGRFWGRTGCDFDGSGSGSCLTGDCGSGQIECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMVVEGTGGTGLCASTGCTSDLNQQCPKELKARNGDACKSACEAFGRPEYCCSGAYGSPATCRPSVYSEMFKAACPKSYSYAYDDASSTFTCAGADYTVTFCPSSPSQKSSRDPDPDPNPTPTTSTTTTSSSSGQGSVAGTGLETGTGKGMGLGTDPSLGYSVTGSGSSSGSRETMLADGSYLADLAMGDSASRRVSLSVLQSMFTEISAAALFLFLSLL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01576 360 SMART tha2 30 243 IPR001938 -
Bva13g01576 360 SUPERFAMILY Osmotin, thaumatin-like protein 28 244 IPR037176 -
Bva13g01576 360 MobiDBLite consensus disorder prediction 299 314 - -
Bva13g01576 360 CDD TLP-PA 29 242 - -
Bva13g01576 360 PANTHER OS03G0233200 PROTEIN 8 269 IPR001938 -
Bva13g01576 360 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Bva13g01576 360 MobiDBLite consensus disorder prediction 262 282 - -
Bva13g01576 360 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Bva13g01576 360 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Bva13g01576 360 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Bva13g01576 360 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Bva13g01576 360 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Bva13g01576 360 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 8 269 - -
Bva13g01576 360 Pfam Thaumatin family 34 243 IPR001938 -
Bva13g01576 360 Gene3D Thaumatin 28 243 IPR037176 -
Bva13g01576 360 MobiDBLite consensus disorder prediction 244 314 - -
Bva13g01576 360 ProSiteProfiles Thaumatin family profile. 27 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01576 Bva-Chr13 9403197 9404948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01576 13 251 Receptor kinase-like Gene Family AT5G38280 48.810 1.80e-77 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01576 - - gmx:100801173 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01576 13 9403197 9404948 Bva13g01576 13 9403197 9404948 ECH
Bva13g01576 13 9403197 9404948 Bva14g02318 14 19991707 19993615 ECH
Bva13g01576 13 9403197 9404948 Bva08g00863 08 4439822 4441759 ECH