Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02651 ATGGACATTTCAGAGTATACAAGGATTGTTCGGGACAAAATTCAGAAGTTTGAGCCAGAACTTGCTACAAAGATACTTGGCTATCTGCTTTTGCAAGACAATGGTGAGCGGGACGTGGTGAAGTTGGCCTCATGCGAGGACCATTTGATTCGCGAAGTGGCCTTTAAGGCCAAAGCCGAGCTTCAAAGATTCGCCAATAAGTCTGCCATAaatcaaatctctattcctgTGAGCCCTCAACAAGGTTTAAGCCATTTATCTGCCAGAACTCCAACTTCTTCAGCAAGCTTGCAGGTGCCCTCTTCCATTTGGGACTCACATTCTCCTCTCAACACAAGTGCAGATTTCCTGACACTATGTTACATGGATTCCATCCCAGAATTTCAGAAGCAACCCCAAATGCTTAGCTTAGAGAATCATCTAGATCATGTAAATGTAGGAAGTGCAGCAATTGGCAATGATTACTATGGTATAGATAATACTGCGACAGGCAATTTGAATGGGAGAACAGGTAGAAGGTTTTCGAGTCCGTCTGAATTTCCAGTCAAGACATgtcacttttttaataaagggTTCTGTAGGCATGGAAGTAGCTGTAGGTATTATCATGGACAAATTATCCCTGAGAGCTCATCACAGGCATATGGAAATGATGCTTCAAAGGATGACCAAATGATTTTACTAGGGTCATTAGCACAGTTAGAGGCAGAAATCGTTGAGCTCCTGAAACCAAGAAGAGGCAACCCTATGTCAATTGCTTCCCTGCCAATGGCGTACTATGATAAGTACAACAAGGTACTTCAGGCTGAAGGTTACCTCACCGAGAGCCAGAGGCATGGTAAATCTGGATACAGTTTGACAAAGCTTCTTGCGCGATTGAAGAATAGCATTAGGCTGATCGACAGACCTCATGGTCAGCATGCAGTGATTCTTGCTGAAGATGCTCCAAAATACATGGAGAAAGGTGATCCTGGTCAAAGTATTAGTGCATCACGCCAGATATACTTAACATTTCCAGCTGACAGCACTTTCACTGAAGAGGATGTCTCAAATTACTTCAAcAAGTTTGGGTGTGTTGAAGATGTCAGGATTCCCTGCCAGCAGAGACGGATGTTTGGGTTTGTTACATTTGTTGATCCATCAACTGTTAAAACCATTTTGGACATGGAAAATCCTCATACTGTTGGTGGGTCTCGTGTGCTTGTGAAACCTTACCGGGAAAAGTCAAAGCTTGTTGATAGGAAGTACTCAGACAGAATTGAACATCATCCAGATTGCTATTCTCCTCATTATGTTGACATGGACTTTGAACTTTCCTCAATGACAAGAGCATGTGGGAACTCTAGATTTATGAGGAGACAACTCATGGAAGAGCAAGAGCAGGCCCTTGAATTTCAGAGGAGACGTCTCGCAGAGTTGCAGATGGCTCAGAAATCTTTGGGTAGTTCACCCAAGTTTGGCTTCTCCATGGATGGATTAAAAGTTCCGGAAGATTGTTTCAATTTCCAGCCCGCAGAGTGTTTTAGTTATGGTCGAAGTGACACATCCAGGTATATAGATACCAGCTACACTGATGAAGAGAGCcaaggactaaatctcccagaTAGCCCATTCGCGTTTCCAGTAGATAATGGAATTTCAGCAGTCATTTA 1652 0.4177 MDISEYTRIVRDKIQKFEPELATKILGYLLLQDNGERDVVKLASCEDHLIREVAFKAKAELQRFANKSAINQISIPVSPQQGLSHLSARTPTSSASLQVPSSIWDSHSPLNTSADFLTLCYMDSIPEFQKQPQMLSLENHLDHVNVGSAAIGNDYYGIDNTATGNLNGRTGRRFSSPSEFPVKTCHFFNKGFCRHGSSCRYYHGQIIPESSSQAYGNDASKDDQMILLGSLAQLEAEIVELLKPRRGNPMSIASLPMAYYDKYNKVLQAEGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHAVILAEDAPKYMEKGDPGQSISASRQIYLTFPADSTFTEEDVSNYFNKFGCVEDVRIPCQQRRMFGFVTFVDPSTVKTILDMENPHTVGGSRVLVKPYREKSKLVDRKYSDRIEHHPDCYSPHYVDMDFELSSMTRACGNSRFMRRQLMEEQEQALEFQRRRLAELQMAQKSLGSSPKFGFSMDGLKVPEDCFNFQPAECFSYGRSDTSRYIDTSYTDEESQGLNLPDSPFAFPVDNGISAVI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02651 550 CDD RRM_AtC3H46_like 334 403 IPR034365 -
Bva12g02651 550 SUPERFAMILY RNA-binding domain, RBD 343 435 IPR035979 GO:0003676
Bva12g02651 550 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 550 - -
Bva12g02651 550 Pfam OST-HTH/LOTUS domain 230 308 IPR025605 -
Bva12g02651 550 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 550 - -
Bva12g02651 550 Gene3D - 138 217 - -
Bva12g02651 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 407 IPR000504 GO:0003723
Bva12g02651 550 ProSiteProfiles Zinc finger C3H1-type profile. 179 206 IPR000571 GO:0046872
Bva12g02651 550 ProSiteProfiles OST-type HTH domain profile. 230 313 IPR025605 -
Bva12g02651 550 Gene3D - 338 405 IPR012677 -
Bva12g02651 550 Coils Coil 456 476 - -
Bva12g02651 550 SMART rrm1_1 333 403 IPR000504 GO:0003723
Bva12g02651 550 SUPERFAMILY CCCH zinc finger 181 204 IPR036855 GO:0046872
Bva12g02651 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 343 400 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02651 Bva-Chr12 19527713 19531678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02651 - - gmx:100806206 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00628 12 8156471 8161204 Bva12g02651 12 19527713 19531678 BWGD
Bva12g02651 12 19527713 19531678 Bva12g02651 12 19527713 19531678 ECH