Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00628 ATGGATTTTTCAAATTCCGCAAAGATAGTGTATGATAGAATCCAGAAATTCGAGCCTGAAAAAGCCTCAAAGATTATAGGGTATCTTATGCTACGAAGCCATGGTGAACATGACATGATCAGACTAGCATTCTGCTCAGATAATATGATCCAATCTGAAATTAACAAAGCCATGATTGATCTTGGCTTATCGAAACCAGTGGTTTCTGCTCCAATCTCTCCCATTCAAGTGGACCATGCAACGGGACTGGACCTGCCTCGACAGCTCATGCCCCTCTCACCAGTTTCATCAAACTACATTTTATCTCCATCAACTGTTGTAAGAAGTGGAAATAAATATTGGGACTCTCAAGTGCCTGCTAATCAGCAGCTAATGCATAATGTGGATTTTGTCTCACCAGCATATTCAGATTCATTTTCTGAAAACTATCTACAAAACCAGATGCAGCACCTGAATTTGGAAACTCAGGTAGAGACTATAAACTCAGTTGGTTCTGATTTTTCAAGCAATTATCATTACACAGAACCTGCATTGGGTGTAAGAACCCGTGGAATATCACCAAGCATGCCCGAATTCCCTGTTAAGGTTTGTCAGTTCTTCAATAAAGGATATTGCAAGCGTGGAAATAACTGTAGGTACTTCCATGGTCATTCTATGCCAGAAAGCTTTTCTCCCATCCTCAGCCCATATTTAAATGAGGTTTTAAATGAAGAGCAAGTGTTCTCTCCATGGTCACTGGGAAAACTTGAAATGGAGTTAACTGAACTTTTGAAGTCTAGAAGAGGATTCCCAGTTTCAATAGCCTCATTGCCAATGTTGTATAATGAAAAGTATGGGAAGACCCTTCAGGCTGAGGGTTATCTTACAGAAAGCCAGAGACATGGTAAGGTTGGGTACAGTCTGACAAAGCTTCTTGATCGGATGAAGAATAGTATTTGTCTTATTGACAGACCTCATGGACAGCACTCAGTTGTCTTGGCAGAAGATGTTCCAAAGTACTTGGAGTATTGTGGTGAGAGAGGTGATCCTGGTGGGATGGTTGCTAGTTCTCATCAGATTTATCTTACATTTCCACCTGATAGCACCTTTCATGAGCAAGATGTATCAAATTACTTCAACACGTTTGGTCCAGTTCAAGATGTTAGGATACCTTGCCAACAGAAGAGGATGTTTGGATTTGTGACTTTTGTGTACGCAGAGACAGTTAGGAAAGTTTTGGCGAAAGGAAATCCTCATTTTGTAGTTGATTCTCGCGTTCTAGTTAAACCTTACAGGGAAAAGTCAAGGCTTGTCGACAGGAAGCttcaagagaaaattaatcatGCCATGTGTTACAGGCCACAGTTTGTAGATGGAGACTCTGAGCATCATTTAGtGCCGCAAGCTTGTGATCAATCAAGAATACTTGGGAAGGTGCTAATGGAGGATTACGAGCATGCAGTCGAACGCGAGGGAAAGCGAATCTCTCCCAAATCCATGTCCAGTCATCCTTACTTCGGATTATCACTTGATGAGTTGAAGCTTTCAGAAGAAGGACAAATGGAGTTCCCAACTGCTGAACAATGGGTCAGGCAGTG 1577 0.4128 MDFSNSAKIVYDRIQKFEPEKASKIIGYLMLRSHGEHDMIRLAFCSDNMIQSEINKAMIDLGLSKPVVSAPISPIQVDHATGLDLPRQLMPLSPVSSNYILSPSTVVRSGNKYWDSQVPANQQLMHNVDFVSPAYSDSFSENYLQNQMQHLNLETQVETINSVGSDFSSNYHYTEPALGVRTRGISPSMPEFPVKVCQFFNKGYCKRGNNCRYFHGHSMPESFSPILSPYLNEVLNEEQVFSPWSLGKLEMELTELLKSRRGFPVSIASLPMLYNEKYGKTLQAEGYLTESQRHGKVGYSLTKLLDRMKNSICLIDRPHGQHSVVLAEDVPKYLEYCGERGDPGGMVASSHQIYLTFPPDSTFHEQDVSNYFNTFGPVQDVRIPCQQKRMFGFVTFVYAETVRKVLAKGNPHFVVDSRVLVKPYREKSRLVDRKLQEKINHAMCYRPQFVDGDSEHHLVPQACDQSRILGKVLMEDYEHAVEREGKRISPKSMSSHPYFGLSLDELKLSEEGQMEFPTAEQWVRQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00628 525 SMART c3hfinal6 191 217 IPR000571 GO:0046872
Bva12g00628 525 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Bva12g00628 525 ProSiteProfiles OST-type HTH domain profile. 245 329 IPR025605 -
Bva12g00628 525 Pfam OST-HTH/LOTUS domain 246 324 IPR025605 -
Bva12g00628 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 438 IPR000504 GO:0003723
Bva12g00628 525 SUPERFAMILY RNA-binding domain, RBD 360 440 IPR035979 GO:0003676
Bva12g00628 525 SMART rrm1_1 352 422 IPR000504 GO:0003723
Bva12g00628 525 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 216 IPR000571 GO:0046872
Bva12g00628 525 Gene3D - 190 242 - -
Bva12g00628 525 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 521 - -
Bva12g00628 525 CDD RRM_AtC3H46_like 353 422 IPR034365 -
Bva12g00628 525 SUPERFAMILY CCCH zinc finger 193 216 IPR036855 GO:0046872
Bva12g00628 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 364 411 IPR000504 GO:0003723
Bva12g00628 525 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 521 - -
Bva12g00628 525 Gene3D - 353 429 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00628 Bva-Chr12 8156471 8161204 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00628 - - pvy:116126368 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00628 12 8156471 8161204 Bva12g02651 12 19527713 19531678 BWGD