Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02608 atgggcGAGTTGCTTCCATTGTTTGAGTCAAAAGAAGCAAGGTTGGGACTTCTTTACAAGGTGTTTGCTTCTACGATATTTGCAGCCATTTGCTGCATATGGGTTTACAGATTACCAAACATTCCTGGAGCTGGAGAGCAAGGACGATGGGCTTGGATTTCCATATCCATGTCTGAACTTGGATTTGGACTCTACTGGATAATCACTCAATCTGTTCGTTGGAGAATCGTCTATCATTCTCCTTTTATGCAAAGACTCTTACAAAGATACGATGAAGATAAGTTACCTGCGATGGACATTTTTGTGTGCACAGCAGACCCTTTGTTGGAGCCTCCAAGTTTGGTCATCAACACAGTGTTATCAACAATGTCATACAATTATCCTCCAGAGAAGCttagtgtttatctttctGATGATGGAGGTTCTGAGCTGACTTTCTATGCTCTCTTGAAGGCCTCTGATTTCTCCAAGCATTGGTTACCCTTTTGCAGAAGATTCAATATTGAACCGAGGTCGCCGGAGGCATACTTCGCCGGCCACCATTCTGGTGACGAAGAATGGTTTTCCATCAAGAAATTATATGAAGAGATGAAAAGTCAGATTGAATCAGTTGAGAAAATGGGTAAGGTTTCTGAAGATATGAGGAAACAACATAAAGGATTCTCTGAATGGAGTCCCAAAACGACAAAGCAGGACCATCAATCTATTATACAAATCATAATTGATGGAAGAGACAAAAATGCTGTGGATGATGATGGATTTCAATTGCCAACGCTTGTATATACGGCTCGGGAAAAGCGACCAAATTATCCTCACCACTTCAAAGCAGGAGCTATGAATGCACTAATAAGAGTTTCGTCAGAGATAAGCAATGCACCCTTCATCCTCAACTTGGACTGTGACATGTATCCAAATAATGCAGATGCAATGAAAGAAGCTCTATGCTTTTTCATGGATGAAAACAAAGGCCACAAAATTTCTCACGTGCAATTCCCACAGAACTTCGACAATGTCACCAAGAATGACCTTTATGGAAATTCATTCCACGAGATCAATAAGGTTGAGTTGGCTGGCATATGTGGATATGGATCAGCTGTGTATTGTGGAACTGGATGCTTTCATAGAAGAGAAAGCATTACAGGAATGCACTTGAAAGATGATAAGCAAAAACCCAGCAGCTACTCTAGAGAGGACAAGAGAAGCGTGGAAGAATTAATTGATGCCTCAAAAGTTCTTGTGGATTGTACCTATGAGCAGGGCACTCTATGGGGCAAGGAGATGGGATTAGTATATGGGGTTTCTGTTGAAGACGTTTGTACTGGTCTTGTTATAGATTGCAGAGGATGGAAATCAATTTACTATAATCCAGAGAGAAAAGCCTTCTTAGGTGTGGCTCCAACAAAGTTAGATGTAGTTCTTGTTCAGCACAAGAGGTGGTCTGGAGGGACGTTCCAGATTTTCTTCTCGAAGTATTGCCCTTTCATTTATGGGTTTAGGAAGATAAAACTGACAAGCCTATGGTCTATTCCCTTTGCATATGCATTTCTTGCCAACGCTACTTACAGCCTATGGGAGAGTCTTACTTCTGGATGTACATTCAAAGGTTGGTGGAACTTTCGAAGAATGACACTCATCCGAAGGACCACTGCACACCTTTTTGGTTTCATTGATGTTTTGAAAAAGCAATTAGGACTATCTGAGACAAAGTTTGACATCACAGACAAGGCAGTATCAGAGGATACTCTCAAGAGATACGAGGAAGAGGTCTTTGattttggaagctcttcaacTATGTTTACAATGATAGCCACTCTTGCTTTGCTGAACCTTTTTGGATTCATTTGGGGATGGAAGAGAGTTATAATGGATTCGGACTTCAACAGCTCAAGCCAACTGATTCTGCAGATTGTTGTTTGTGGAATGATTGTAATGGTGAATAAACCAGTTTATGAGGCACTCTTCTTCCGGAATGATAATGGCCAGTTTCCATCTTCGGTCATGCCCAAGTCCATGCTTGTGGCTTCATTGGCTTGCTGCCTTGCAACTCTATTCTA 2054 0.406 MGELLPLFESKEARLGLLYKVFASTIFAAICCIWVYRLPNIPGAGEQGRWAWISISMSELGFGLYWIITQSVRWRIVYHSPFMQRLLQRYDEDKLPAMDIFVCTADPLLEPPSLVINTVLSTMSYNYPPEKLSVYLSDDGGSELTFYALLKASDFSKHWLPFCRRFNIEPRSPEAYFAGHHSGDEEWFSIKKLYEEMKSQIESVEKMGKVSEDMRKQHKGFSEWSPKTTKQDHQSIIQIIIDGRDKNAVDDDGFQLPTLVYTAREKRPNYPHHFKAGAMNALIRVSSEISNAPFILNLDCDMYPNNADAMKEALCFFMDENKGHKISHVQFPQNFDNVTKNDLYGNSFHEINKVELAGICGYGSAVYCGTGCFHRRESITGMHLKDDKQKPSSYSREDKRSVEELIDASKVLVDCTYEQGTLWGKEMGLVYGVSVEDVCTGLVIDCRGWKSIYYNPERKAFLGVAPTKLDVVLVQHKRWSGGTFQIFFSKYCPFIYGFRKIKLTSLWSIPFAYAFLANATYSLWESLTSGCTFKGWWNFRRMTLIRRTTAHLFGFIDVLKKQLGLSETKFDITDKAVSEDTLKRYEEEVFDFGSSSTMFTMIATLALLNLFGFIWGWKRVIMDSDFNSSSQLILQIVVCGMIVMVNKPVYEALFFRNDNGQFPSSVMPKSMLVASLACCLATLF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02608 684 SUPERFAMILY Nucleotide-diphospho-sugar transferases 113 522 IPR029044 -
Bva12g02608 684 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 503 680 - -
Bva12g02608 684 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 4 503 - -
Bva12g02608 684 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 181 IPR029044 -
Bva12g02608 684 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 227 387 IPR029044 -
Bva12g02608 684 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 4 503 - -
Bva12g02608 684 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 503 680 - -
Bva12g02608 684 Pfam Cellulose synthase 505 678 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bva12g02608 684 Pfam Cellulose synthase 404 503 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bva12g02608 684 Pfam Cellulose synthase 98 391 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02608 Bva-Chr12 19300947 19304311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02608 6 683 Glycosyltransferase AT1G55850 46.547 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02608 - - gmx:100816849 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01146 12 11058795 11066774 Bva12g02608 12 19300947 19304311 BWGD
Bva12g02608 12 19300947 19304311 Bva12g02608 12 19300947 19304311 ECH