Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02219 ATGTCGTTGTTAAGATGTTTCTATGTTATACTCAGAAGGCCGAAGAGAGTTAAGGAGAAGGAACAATCTTTCAATGAGCACCTCCCTCAAACGGTACATGCTAAGATAGAACATCCGAGAAAAGCATTGGAGACTGATGAATTGAAGCCCGCTATTTTTGATGCTGAAATAACCTGTGTTAACGAAAAGACTTCTCGGTGCAATGTGAGGGTTATGAGTCTTGAGAGTCCTGTCAAAGCTGAAGTGGAGGAAGCTTATGAAGGGGAAGATGAACATTCGGATCTCTGCTCCATGAAGAGGGATTTCTCTGACTTTGATCTTCAAGCCTGTGCAGATTTTTCAGGTGAAGCAAGTTGTGAACCCAGAGACAAAGATAGAAATTTACATGAAATTCAAGCCAACAATCTTTTTGAAGAcagaaatgataaatatggTGAAAAGAGTCCCGATTTGATCCATAATGGGCATGTAAGTGATCCTGGATTTGGCAAATCTTTCTTCTGGGCTTCACCAGAGCTCAAGCGCTCCTGCTCTAACTTGGAAAGAAGGGATGTGCTTAGAAAGATGACTAAACTGTCGCCTTCTTCAAAGTCACAGTCCTATGAGGATTTGCAGGAATTATCAGCACTGGAGAACGAAATTGCCAATCTTAAAAGCCCCAGGTCTGAGAAGTCTTGTCGCAGTGCTGATAGAGTGATGCTGAGAAAGCATTCATCTAGTCAAGTTCTCCCTTCTGGAAGTAGAAGATTGTGGTGGAAGTTGTTTTTGTGGAGCCACAGGAATATACATAAACCTTGGACTGGCAGAACAACACAATTACTCCCTCCTAGTCCACCTTTAAATAGGCAGAGTGGATATACTTCAGATACTCTTGAGCTAAAACAAGGCAAGGCCTTGAGAAATGTGGAATCATATGGATCATTCACAGGGGAATCCACTGGCAAAAGCTGCATTGATGAAAGTATGGATAACCAAATCTGGGGAAGAAACCACAATGCAGATTCAGGTTTCTGGCCCCAGAATCAATGGTTTGCTTTCTCAACAGAATCATCCTCTCCCCAAAATCAATTGTTTGCTTTCTCAACAGAATCATCCTCTCCCCAAAATCAATTGTTTGCTTTCTCAACAGAATCATCCTCTCTTACAAGAGTGGATGAGTGGGTAAGAGATCTTGAGACTCAACAGATACTTccaatgaatgaaaatgataacaaTGTTCAAAGTTTTGTCTTTCCACCATCTCCTGATGCTGACAGATCAATGGCAAGAGGCACATCTCAGTATCTTCGACATCCAGATGAAAATCTTTCCAAGGAGATTCTGAAAGCCAATAGTGTCTGCCAGTCTCTTAATCCAACGTCCACCGTGGCTCACATCTCGGGTATTGGTTTAAGAGCTATCCCTGCCATTTCACGTTTCTCCAGTCTTCGCTCTGTCAACTTGTCAAGCAACTTCATAGTCCAAATCACCACAGGATCTCTCCCTAAGGGCCTTCACACGCTTAACTtgtcaagaaataaaatcagcACCATTGAAGGACTGAGAGAGTTAACAAGATTGCGGATACTTGACCTAAGTTACAATCGCATCTCTAGAACTGGACAAGGCTTATCAAATTGTACACTCATCAAAGAGTTGTATCTTGCGGGGAACAAGATAAGTGATGTCGAGGGGCTACACAGGCTACTTAAGCTAACAGTTTTAGACCTAAGTTTCAACAAGATCACAACAACAAAAGCGTTAGGCCAGCTAGTAGCTAACTACAACTCCCTTCAGGCTCTGAATCTGCTTGGAAATCCAATTCAGAGCAATGTCAGCGATGACCAGCTGCGAAAGGCAGTTTGTGGTCTTCTTCCCAAGCTTGTGTACCTGAATAAGCAATCTATCAAACCTCAGAGGGCACGAGAAGTGCTTACGGACAGTGTTGCCAAAGCTGCACTTGGGAACAGCAGCCGAAGCTCACACAGAAAAGCACCTAAGAAAGCAAGCCAGGGAGGATCAGGTTCATCTACAGGGCACCGGAGCAATGCAAGTGTTGCCCAGAAAAGCAGGAGCAGATCAAGGATCCGAACTCCTCAAAAACCACCCTTATCGTG 2096 0.4251 MSLLRCFYVILRRPKRVKEKEQSFNEHLPQTVHAKIEHPRKALETDELKPAIFDAEITCVNEKTSRCNVRVMSLESPVKAEVEEAYEGEDEHSDLCSMKRDFSDFDLQACADFSGEASCEPRDKDRNLHEIQANNLFEDRNDKYGEKSPDLIHNGHVSDPGFGKSFFWASPELKRSCSNLERRDVLRKMTKLSPSSKSQSYEDLQELSALENEIANLKSPRSEKSCRSADRVMLRKHSSSQVLPSGSRRLWWKLFLWSHRNIHKPWTGRTTQLLPPSPPLNRQSGYTSDTLELKQGKALRNVESYGSFTGESTGKSCIDESMDNQIWGRNHNADSGFWPQNQWFAFSTESSSPQNQLFAFSTESSSPQNQLFAFSTESSSLTRVDEWVRDLETQQILPMNENDNNVQSFVFPPSPDADRSMARGTSQYLRHPDENLSKEILKANSVCQSLNPTSTVAHISGIGLRAIPAISRFSSLRSVNLSSNFIVQITTGSLPKGLHTLNLSRNKISTIEGLRELTRLRILDLSYNRISRTGQGLSNCTLIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLQALNLLGNPIQSNVSDDQLRKAVCGLLPKLVYLNKQSIKPQRAREVLTDSVAKAALGNSSRSSHRKAPKKASQGGSGSSTGHRSNASVAQKSRSRSRIRTPQKPPLS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02219 698 Pfam Leucine rich repeat 475 530 IPR001611 GO:0005515
Bva12g02219 698 Gene3D Ribonuclease Inhibitor 535 635 IPR032675 -
Bva12g02219 698 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 693 - -
Bva12g02219 698 SMART LRR_sd22_2 517 539 - -
Bva12g02219 698 SMART LRR_sd22_2 495 516 - -
Bva12g02219 698 SMART LRR_sd22_2 562 583 - -
Bva12g02219 698 SMART LRR_sd22_2 540 561 - -
Bva12g02219 698 PANTHER NISCHARIN RELATED 4 693 - -
Bva12g02219 698 ProSiteProfiles Leucine-rich repeat profile. 542 563 IPR001611 GO:0005515
Bva12g02219 698 ProSiteProfiles Leucine-rich repeat profile. 564 585 IPR001611 GO:0005515
Bva12g02219 698 MobiDBLite consensus disorder prediction 647 698 - -
Bva12g02219 698 Gene3D Ribonuclease Inhibitor 432 534 IPR032675 -
Bva12g02219 698 SMART LRR_typ_2 473 496 IPR003591 -
Bva12g02219 698 SMART LRR_typ_2 562 584 IPR003591 -
Bva12g02219 698 SMART LRR_typ_2 517 540 IPR003591 -
Bva12g02219 698 ProSiteProfiles Leucine-rich repeat profile. 497 518 IPR001611 GO:0005515
Bva12g02219 698 SUPERFAMILY Outer arm dynein light chain 1 466 631 - -
Bva12g02219 698 Pfam Leucine Rich repeat 564 576 IPR001611 GO:0005515
Bva12g02219 698 MobiDBLite consensus disorder prediction 663 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02219 Bva-Chr12 17053731 17057657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02219 522 655 Receptor kinase-like Gene Family AT5G07280 33.577 7.07e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02219 - - gmx:100810094 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02219 12 17053731 17057657 Bva06g02714 06 17088698 17092261 BWGD
Bva12g02219 12 17053731 17057657 Bva12g02219 12 17053731 17057657 ECH