Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva12g02213 | ATGtcaggtggtggtggtggtggatgTAGCATAGTATGGTTCAGAAGAGATCTGAGGGTTGAGGATAATCCAGCACTGACGGCAGGAGTGAGAGCAGGAGCTGTGGTTGCAGTTTTTATATGGGCACCTGAAGAAGAAGGCCAATACTATCCTGGCAGGGTCTCCAGGTGGTGGCTCAAGCAAAGTTTGGCTTTTCTTGATTCCTCTTTGAGGAATCTTGGCGCTCCTCTAATAACCAAGCGATCCACCGATAGTGTTTCTACTCTATTAGAAGTTGTCAAGTCCACTGGAGCAACCCAACTCTTTTTTAATCACTTATATGATCCCCTGTCACTTATTAGAGATCACCGAGCAAAGGAGGTTCTGACTTCTCATGGCATAGCCGTCCGGTCCTTCAATGCTGATTTACTGTATGAACCATGGGATGTCAATGATGCACATGGCCAGCCATTCACAACTTTCTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCCTATGACCCAGAAGCACCTCTACTACCCCCTAAAAGGATTATTCCAGgtGATATATCCAGGTGCCCTTGTGATACATTAGTGTTTGAAGATGAATTTGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCTTGGTCACCTGGGTGGAACAATGCTGATAAGGCACTGACAGCTTTCATAAATGGTCCACTCATTGAGTACTCAAGAAATCGCAGGAAGGCTGACAGTGCCACAACCTCATTTCTCTCTCCCCATTTGCATTTTGGCGAGGTGAGTGTCAAGAAAGTGTTCCATCTTGTCCGCATTAGGCAAGTTTTATGGGCGAACGAAGGAAACAAGGCTGGTGAAGAAAGTGTCAACTTGTTTCTTAAATCTATTGGCCTTAGAGAATATTCAAGGTACATTAGTTTTAACCATCCCTATAGTCACGAACGGCCTCTTCTAGGCCATCTTAAGTTCTTTCCTTGGGTAGTAAATGAAGGGTATTTCAAGGCATGGAGACAAGGCAGAACTGGGTACCCATTGGTGGATGCTGGCATGAGAGAGTTGTGGGCAACTGGTTGGCTGCATGATCGGATACGTGTTGTGGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATGCCCTGTTAGACGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGCCGTGAATTTGACCGAATAGATAATCCACAGTTTGAGGGATACAAATTTGATCCAAATGGAGAATATGTACGACGCTGGCTTCCAGAACTTGCAAGATTACCAACTGAATGGATACACCATCCATGGAATGCTCCAGAGTCTGTACTGCAAGCTGCTGGAATTGAGCTGGGATCCAATTACCCTCTTCCCATTGTGGGAATAGATACTGCAAAAGCCAGGTTGCAAGAAGCACTTTCACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCGATTGAAAATGGAACTGAGGAAGGGCTTGGAGACTCCTCTGAATCAGCCCCTTATACCTTTCCTCAAGACATACAGATGGAAGAAAACCTTGAACCTGTTAGGAATAATCCTCCTTCTGCTCCTCGACGTTACGAGGATCAGATGGTCCCGAGCATCACTTCTTCTCTGTTGAGaatagaagaggaagaaacttCTTCGGATCTTCGAAACTCAGCAGCAGATAGCAGAGCAGAAGTGCCCATAAACGTAAACGTACAACAAAATGCAAGAGTGACATTGAACCCTGGGGCAGCGGTGTTACAGAGTCCTCATAGCAATGCTAGACTGCAGCAAAATAATGGTGCAACGGAGCTGAGAATTACAGCTGAAGATTCCACAGCAGAATCTTCAAGCAGTGGCAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCTCCACCAACTTCCAGTTTCTCAGAGCAGTTTGTAGGAGATGAAAATGGTATAGGAACAAGTTCATCTTATTTACAGAGGCATCCTCAGACTCACGAAATACTGAATTGGAGGCGGCTACCTCAGACTGGGTA | 2060 | 0.4485 | MSGGGGGGCSIVWFRRDLRVEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLAFLDSSLRNLGAPLITKRSTDSVSTLLEVVKSTGATQLFFNHLYDPLSLIRDHRAKEVLTSHGIAVRSFNADLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPEAPLLPPKRIIPGDISRCPCDTLVFEDEFEKASNALLARAWSPGWNNADKALTAFINGPLIEYSRNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIRQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDALLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDTAKARLQEALSQMWQQEAASRAAIENGTEEGLGDSSESAPYTFPQDIQMEENLEPVRNNPPSAPRRYEDQMVPSITSSLLRIEEEETSSDLRNSAADSRAEVPINVNVQQNARVTLNPGAAVLQSPHSNARLQQNNGATELRITAEDSTAESSSSGRRERDGGVVPVWSPPTSSFSEQFVGDENGIGTSSSYLQRHPQTHEILNWRRLPQTG | 686 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva12g02213 | 686 | ProSitePatterns | DNA photolyases class 1 signature 1. | 335 | 347 | IPR018394 | - | |
| Bva12g02213 | 686 | MobiDBLite | consensus disorder prediction | 643 | 669 | - | - | |
| Bva12g02213 | 686 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 304 | 505 | - | - | |
| Bva12g02213 | 686 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 195 | 491 | IPR036134 | - | |
| Bva12g02213 | 686 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 10 | 181 | IPR036155 | - | |
| Bva12g02213 | 686 | PANTHER | CRYPTOCHROME | 8 | 603 | IPR002081 | - | |
| Bva12g02213 | 686 | ProSitePatterns | DNA photolyases class 1 signature 2. | 355 | 374 | IPR018394 | - | |
| Bva12g02213 | 686 | PRINTS | DNA photolyase signature | 394 | 408 | IPR002081 | - | |
| Bva12g02213 | 686 | PRINTS | DNA photolyase signature | 146 | 162 | IPR002081 | - | |
| Bva12g02213 | 686 | PRINTS | DNA photolyase signature | 335 | 351 | IPR002081 | - | |
| Bva12g02213 | 686 | PRINTS | DNA photolyase signature | 355 | 373 | IPR002081 | - | |
| Bva12g02213 | 686 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 8 | 137 | IPR006050 | - | |
| Bva12g02213 | 686 | TIGRFAM | crypt_chrom_pln: cryptochrome, plant family | 9 | 485 | IPR014134 | GO:0009785|GO:0009882 | |
| Bva12g02213 | 686 | MobiDBLite | consensus disorder prediction | 600 | 625 | - | - | |
| Bva12g02213 | 686 | PANTHER | CRYPTOCHROME-1 | 8 | 603 | - | - | |
| Bva12g02213 | 686 | MobiDBLite | consensus disorder prediction | 600 | 669 | - | - | |
| Bva12g02213 | 686 | Pfam | FAD binding domain of DNA photolyase | 286 | 484 | IPR005101 | - | |
| Bva12g02213 | 686 | Pfam | Blue/Ultraviolet sensing protein C terminal | 513 | 631 | IPR020978 | - | |
| Bva12g02213 | 686 | Gene3D | HUPs | 11 | 209 | IPR014729 | - | |
| Bva12g02213 | 686 | Pfam | DNA photolyase | 10 | 166 | IPR006050 | - | |
| Bva12g02213 | 686 | Gene3D | - | 137 | 296 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva12g02213 | Bva-Chr12 | 17021219 | 17024525 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva12g02213 | K12118 | - | gmx:100786551 | 1214.91 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva12g02213 | 12 | 17021219 | 17024525 | Bva06g02723 | 06 | 17125143 | 17128950 | BWGD | |
| Bva12g02213 | 12 | 17021219 | 17024525 | Bva12g02213 | 12 | 17021219 | 17024525 | ECH |