Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva06g02723 | ATGTCAGGTGGTGGATGTAGCATAGTATGGTTCAGAAGAGATCTGAGGGTAGAGGATAATCCAGCACTGACGGCAGGGGTGAGAGCAGGAGCTGTGGTTGCAGTTTTCATATGGGCACCTGAAGAAGAAGGCCAATACTATCCTGGCAGAGTCTCTAGGTGGTGGCTCAAGCAAAGTTTGGCTTTTCTGGATTCCTCTTTGAGGAGTCTTGGCGCTCGTCTTATAACCAAGCGATCCACTGAtagcttttcttctcttctagAGGTTATCAAGTCCACCGGAGCCACCCAActcttttttaatcatttatatgATCCTCTCTCACTTGTTAGAGATCACCGCGTGAAGGAGGTTCTGACTTCTCAGGGCATAGCCGTACGCTCCTTCAATGCAGATTTACTGTATGAACCATGGGATGTCAATGATGCACACGGCCGACCATTCACaactttttctgctttttggGAAAGATGCCTCAGCATGCCTTATGACCCAGAAGCACCTCTACTTCCCCCTAAAAGGGTTATTCCAGGTGATGTATCAAGGTGCTCTTGTGATACATTAGTGTTTGAAGATGAATTTGAGAAGGCAAGCAATGCTCTTCTAGCTCGAGCTTGGTCACCTGGGTGGAGCAATGCTGATAAGGCGTTGACAACATTCATAAATGGACCACTGATTGAGTATTCAAAAAATCGCAGGAAGGCTGACAGTGCCACTACCTCATTTCTTTCCCCCCATTTGCATTTTGGTGAGGTGAGTGTCAAAAAGGTGTTCCATCTTGTCCGCATTAAGCAAGTTTTGTGGGCGAATGAAGGAAACAAGGCTGGCGAAGAAAGTGTGAACTTGTTTCTTAAATCTATTGGTCTTAGAGAGTATTCAAGGTACTTTACTTTTAACCACCCCTACAGTCACGAACGGCCTCTTCTAGGCCATCTTAAGTTCTTTCCATGGGTAGTGAATGAAGGGCATTTTAAGGCATGGAGACAAGGCAGAACTGGGTACCCATTGGTGGATGCTGGCATGAGAGAGTTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTGGTTTCCAGTTTCTTTGTTAAGGTTCTCCAGCTTCCTTGGAGATGGGGGATGAAATATTTCTGGGATACCCTCTTGGATGCCGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCCGGTACTCTCCCTGATGGCCGTGAATTTGACCGAATAGATAACCCACAGTTTGAGGGATACAAATTTGATCCAAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGACTACCAACTGAATGGATACATCATCCATGGAATGCCCCAGAATCTGTACTACAGGCAGCTGGAATTGAGCTTGGGTCCAATTACCCTCTTCCAATTGTGGGGATAGATGCTGCAAAAGCCAGGCTGCAAGAAGCACTATCACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCGATTGAAAACGGAACTGAGGAAGGGCTTGGAGACTCCTCTGAGTCAGCCCCTTATGCTTTTCCTGAAGACGTACAGATGGAAGAAAATCATGAACCTGTTAGGAATAATCCCCCTTCTGTTCCTCGGCGTTATGAGGATCAGATGGTCCCAAGCATTACTTCTTCTCTGGTGAGaatagaagaggaagaagcttCTTCAGATCTTCGACACTCAACAGCAGATAGCAGAGGAGAGGTGCCAATAAACGTAAATATACATCAAAATGCAGGAGTGACATTTAACCCGGGGGCAGGGGTACTGCAGAGTCACCATGACAATACTGGACTGCAGCATAATAATACTGCCACAGGGCTGAGACTTGCAGCTGAAGATTCCATATCAGAATCTTCAAGTAGTGGtagaagagaaagggaaggaGGTGTAGTTCCAGTATGGTCTCCACCAACTTCTAGTTTCTCAGAGCAATTTGTAGGAGATGAAAATGGTTTAGGAGCAAGTTCATCTTATCTACAGAGGCATCCCCATTCTCACGAAATACTAAATTGGAGGCGGCTACCTCAGACTGGGTA | 2051 | 0.4447 | MSGGGCSIVWFRRDLRVEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLAFLDSSLRSLGARLITKRSTDSFSSLLEVIKSTGATQLFFNHLYDPLSLVRDHRVKEVLTSQGIAVRSFNADLLYEPWDVNDAHGRPFTTFSAFWERCLSMPYDPEAPLLPPKRVIPGDVSRCSCDTLVFEDEFEKASNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYFTFNHPYSHERPLLGHLKFFPWVVNEGHFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALSQMWQQEAASRAAIENGTEEGLGDSSESAPYAFPEDVQMEENHEPVRNNPPSVPRRYEDQMVPSITSSLVRIEEEEASSDLRHSTADSRGEVPINVNIHQNAGVTFNPGAGVLQSHHDNTGLQHNNTATGLRLAAEDSISESSSSGRREREGGVVPVWSPPTSSFSEQFVGDENGLGASSSYLQRHPHSHEILNWRRLPQTG | 683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva06g02723 | 683 | Pfam | Blue/Ultraviolet sensing protein C terminal | 510 | 628 | IPR020978 | - | |
| Bva06g02723 | 683 | MobiDBLite | consensus disorder prediction | 517 | 569 | - | - | |
| Bva06g02723 | 683 | PANTHER | CRYPTOCHROME | 1 | 598 | IPR002081 | - | |
| Bva06g02723 | 683 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 5 | 134 | IPR006050 | - | |
| Bva06g02723 | 683 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 301 | 502 | - | - | |
| Bva06g02723 | 683 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 7 | 178 | IPR036155 | - | |
| Bva06g02723 | 683 | Pfam | DNA photolyase | 7 | 163 | IPR006050 | - | |
| Bva06g02723 | 683 | ProSitePatterns | DNA photolyases class 1 signature 2. | 352 | 371 | IPR018394 | - | |
| Bva06g02723 | 683 | TIGRFAM | crypt_chrom_pln: cryptochrome, plant family | 6 | 482 | IPR014134 | GO:0009785|GO:0009882 | |
| Bva06g02723 | 683 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 192 | 488 | IPR036134 | - | |
| Bva06g02723 | 683 | MobiDBLite | consensus disorder prediction | 617 | 663 | - | - | |
| Bva06g02723 | 683 | Gene3D | HUPs | 8 | 206 | IPR014729 | - | |
| Bva06g02723 | 683 | MobiDBLite | consensus disorder prediction | 640 | 663 | - | - | |
| Bva06g02723 | 683 | MobiDBLite | consensus disorder prediction | 554 | 568 | - | - | |
| Bva06g02723 | 683 | Pfam | FAD binding domain of DNA photolyase | 283 | 481 | IPR005101 | - | |
| Bva06g02723 | 683 | Coils | Coil | 470 | 490 | - | - | |
| Bva06g02723 | 683 | ProSitePatterns | DNA photolyases class 1 signature 1. | 332 | 344 | IPR018394 | - | |
| Bva06g02723 | 683 | Gene3D | - | 134 | 293 | - | - | |
| Bva06g02723 | 683 | PRINTS | DNA photolyase signature | 352 | 370 | IPR002081 | - | |
| Bva06g02723 | 683 | PRINTS | DNA photolyase signature | 143 | 159 | IPR002081 | - | |
| Bva06g02723 | 683 | PRINTS | DNA photolyase signature | 332 | 348 | IPR002081 | - | |
| Bva06g02723 | 683 | PRINTS | DNA photolyase signature | 391 | 405 | IPR002081 | - | |
| Bva06g02723 | 683 | PANTHER | CRYPTOCHROME-1 | 1 | 598 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva06g02723 | Bva-Chr6 | 17125143 | 17128950 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva06g02723 | K12118 | - | gmx:100786551 | 1199.88 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva12g02213 | 12 | 17021219 | 17024525 | Bva06g02723 | 06 | 17125143 | 17128950 | BWGD | |
| Bva06g02723 | 06 | 17125143 | 17128950 | Bva06g02723 | 06 | 17125143 | 17128950 | ECH |