Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02200 ATGCTTGACAGATACTCGCACGGCTTAATGTCTGACAAAAACATGAGTTACGCACAGAACGTGAACGTGGATGAGAGGCTGGGAAAGTGGTGGAGTGAAATTTCTAATGCACCGCGTCTCAATCTTCGTCGTCAACCCGAGCATGCGTCGATGACTTCCCCTGTTAGCAGAGTCTCTCTGACACCGGACTCTTCTAATTCTTTCTCGAATGGCTATCATTTTCCTGGCGATGCCTTTCCATATTCGGCACCGTTTCAGGATATTAAGCATCAAACGGCCAACGATCATTGCTCCACTATCCTTGGGCTGGACTCTGACTCATCGTATTTTCATCTCGGAAAGAATATCAGTGAGAAGCAGGAGGATGATCTGGGTTTCTCTGAGGATTTCTCTAGAATGAACATAACAGATGGACAGGAGAATGGTACGAAAACCAAAGGACAAAAAATGAACTCCTTCGGGTTTGGCTCTGAAACTAGCTTATTGGATGCAAATATTTCCACCTGTACTGAATCTGGTCGCCCATATGAAGGCATTCACAATGAAGTCCTGGGTATACCATCCTATAACTGTGGAGTTTCGCCAAGGCTATTTTATGATAGGAAGTGGACATTGCCTGACTCAGGAGAAGGATACGCATTTGGCACCTCGGTGGAGTCTTCTCTCGCTTTTGATCAGTATTTGGACCCTAGTTGGAACCGGAACCAATTTTATCATCTAAATCTAATTGAGCACAAAAAGAAACAGGGAAGCAGTAGTTATGAAGGGCAAGTTCAATTGCAGAAGCCATCTATTCCCGGCTCTCATCTTTATGATGGCTATATGAGCTCACAACTTTGCGGAATGGACTATGAAGGAGGTTGGAATGCCAAAAATCCCAAGCATGCTTTGAATCTGGAAAGTCCATCACATTGTTGTCCAATAATTAAACAGAGGGCGAGGGCAGCTACCAAGAATCAACTTCCCCAATTTCTTTCGTCCAACAGAAATGGAGCTGACCCTGCGGCCTTTAGATGTGATAGTAGTTTTATCATAcaaggaaaagatataaaGGATTGCATTGATAGAGGCTGCAATTCCTTAAGCTGTTACAAAAAGAATTCCCACAATCCATTTGGGGGAGTGGAAGTTTCTGAACACAATCCCCTTGTTCCCggtagtaaaaattttaaaaacaacaGCAGTATTGGTGGTGATTTCCCATTGCCATTGCTGCTAACTTTCTATTCTTTCGCTGAGGCCCAATGCTATATATTCAATCTGGCAAAGGATCAGAATGGCTGTCGCTACCTACAAAGGATTGTTGATGAGGGAACCAGTGAAGCTATGCAAATAGTATTCGAGGGAATCATACATAATGTTGTTGAACTTATGATAGACCCTTTTGGCAATTATCTTGTACAGAAATTGTTGGATGTATGCGGAGAGGAAATGAAATTGCAGATTGTGTTCATGGTGACTAAAGAACCAGGGCAGCTTGTCAAAATCTCTTTAAACACCCACGGCACACGGGTGGTACAGAAGTTGATTGAGACTCTCAACACTAGGCAACAAATTTCACTAGTCAAATCAGCTCTTCAACCAGGTTTTCTTGATCTTATTAAGGATCTAAATGGAAATCATGTCATACAACGTTGCTTGCAGCGCCTTACCTGTCAAGATAATGAGTTTATTTTTGATGCCGCTGCTAAGTTCTGTGTTGACATAGCAACTCATCGACATGGATGTTGTGTACTGCAACGTTGCATTGATAATGCCGAAGGGAAATATCGAGATAAGCTGGTAACAGAAATATGTAGACACGGGCTTCTCCTTGCTCAAGATCCTTTTGGAAATTATGTTGTTCAATATATTATAGAGATGCAGATCCCAATTGCCTCTGCCAAACTAATTTCTCTGTTCAAAGGGAGCTATGTTAACCTCTCAACACAAAAATTTAGCAGTCATGTGGTTGAAAAATGTCTAAAGCATGTGGCAGAGAGCAGACCAAGAATCGTCCGAGAATTGATGGCTGTATCTAACTTTGAACAGTTGTTGCAAGACCCATATGCCAATTATGTCATTCAGTCAGCTCTTGTAGTTACCAAGGGCTCTCTTCATGCATCTTTGGTCGAAGCAGTTCGCCCTTACAAAATCTTGCGCACCAGCCCATATTGCAAGAGGATTTTCTCGGGAAATCTGCTTAAGAATTG 2192 0.4188 MLDRYSHGLMSDKNMSYAQNVNVDERLGKWWSEISNAPRLNLRRQPEHASMTSPVSRVSLTPDSSNSFSNGYHFPGDAFPYSAPFQDIKHQTANDHCSTILGLDSDSSYFHLGKNISEKQEDDLGFSEDFSRMNITDGQENGTKTKGQKMNSFGFGSETSLLDANISTCTESGRPYEGIHNEVLGIPSYNCGVSPRLFYDRKWTLPDSGEGYAFGTSVESSLAFDQYLDPSWNRNQFYHLNLIEHKKKQGSSSYEGQVQLQKPSIPGSHLYDGYMSSQLCGMDYEGGWNAKNPKHALNLESPSHCCPIIKQRARAATKNQLPQFLSSNRNGADPAAFRCDSSFIIQGKDIKDCIDRGCNSLSCYKKNSHNPFGGVEVSEHNPLVPGSKNFKNNSSIGGDFPLPLLLTFYSFAEAQCYIFNLAKDQNGCRYLQRIVDEGTSEAMQIVFEGIIHNVVELMIDPFGNYLVQKLLDVCGEEMKLQIVFMVTKEPGQLVKISLNTHGTRVVQKLIETLNTRQQISLVKSALQPGFLDLIKDLNGNHVIQRCLQRLTCQDNEFIFDAAAKFCVDIATHRHGCCVLQRCIDNAEGKYRDKLVTEICRHGLLLAQDPFGNYVVQYIIEMQIPIASAKLISLFKGSYVNLSTQKFSSHVVEKCLKHVAESRPRIVRELMAVSNFEQLLQDPYANYVIQSALVVTKGSLHASLVEAVRPYKILRTSPYCKRIFSGNLLKN 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02200 730 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 385 730 IPR033133 GO:0003723
Bva12g02200 730 ProSiteProfiles Pumilio RNA-binding repeat profile. 449 485 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 633 667 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 597 632 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 525 560 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 670 705 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 488 523 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 449 484 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 413 448 IPR001313 GO:0003723
Bva12g02200 730 SMART pum_5 561 596 IPR001313 GO:0003723
Bva12g02200 730 ProSiteProfiles Pumilio RNA-binding repeat profile. 668 705 IPR001313 GO:0003723
Bva12g02200 730 ProSiteProfiles Pumilio RNA-binding repeat profile. 525 560 IPR001313 GO:0003723
Bva12g02200 730 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 25 729 - -
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 492 522 IPR001313 GO:0003723
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 604 620 IPR001313 GO:0003723
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 530 560 IPR001313 GO:0003723
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 453 483 IPR001313 GO:0003723
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 638 668 IPR001313 GO:0003723
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 418 451 IPR001313 GO:0003723
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 677 691 IPR001313 GO:0003723
Bva12g02200 730 Pfam Pumilio-family RNA binding repeat 566 599 IPR001313 GO:0003723
Bva12g02200 730 Gene3D - 407 726 IPR011989 -
Bva12g02200 730 CDD Pumilio 416 724 IPR033712 GO:0003723
Bva12g02200 730 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 25 729 - -
Bva12g02200 730 SUPERFAMILY ARM repeat 413 723 IPR016024 -
Bva12g02200 730 ProSiteProfiles Pumilio RNA-binding repeat profile. 488 523 IPR001313 GO:0003723
Bva12g02200 730 ProSiteProfiles Pumilio RNA-binding repeat profile. 597 632 IPR001313 GO:0003723
Bva12g02200 730 ProSiteProfiles Pumilio RNA-binding repeat profile. 561 596 IPR001313 GO:0003723
Bva12g02200 730 ProSiteProfiles Pumilio RNA-binding repeat profile. 413 448 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02200 Bva-Chr12 16958618 16963028 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02200 - - aip:107608433 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02200 12 16958618 16963028 Bva06g02733 06 17182583 17187422 BWGD
Bva12g02200 12 16958618 16963028 Bva12g02200 12 16958618 16963028 ECH