Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02733 ATGTCGAGAATATCTGAGAAAAACAAGAGCTACACAGATAACCTGAAGATGAATGAGGAGCTGGTGCAGTGGTGGAATGGAATTCCTAATGCTCAATGTCTCAATCTTCATCGTCGTCAACCTGAGCATGTGTCCATTAGTTCCCCTGTTAGCAGAGTCTCTCTGACACCGAAATCTCCtgcttcaaattctttctctaATGGGTATCATTTTGCTGGCGATGCCTGCCCGTATCCAGATGTTAAGCATCAAACACTCAACGATCATTACTCCACTAAATTGGACTCCGACTCATcggatttttgttttgaaaacaaCATCAGTGCCAATTGGGAAAATGATCTGGGGCTCTCTGAGAATTTCTTAAGAATGAACATAACAGATGGACAGGGGAATGGTACAAGAATCAAGGGACAAAAAATGGGCTCCCACGGGTTTGGCTCTCAAACTTATTCATTAGATGCAAATATTCCCACATTTACTGAATCTGGTTGCTCGTATGATGGTTTTCAAAATGGAGTTGTGGGTATAACATCCTCAAACCGTGTAGTTTCACCGAGCCTAATTCACGATAGGAAGCGGTCATTGCCTTGCTCGGGAAAAGGATACGCTTTTGGCACCTCGGTGGAGTCTTCTCTCGCTCATGATCAGTCTAGCGCTTCTTATTTGGGCTCTAGTTGGAAGAGGAACCAATTATTATATCATCTAAATTTAATGGAGCAGGAGAAGAAACAGGGAAGCATTTGTGACGGACAAGTTCAATTGCAGAAGTCATTTACTCCAGGTCCTTATCTTTGTGATGGCTATATGAACTCAACTTCTTGTGGAAGGAACCATGAAGGAGGCTGTAACGGTAAAAATACCATGAAATTCTCTGAATGGATGCACCCCACCAAGCTTGCTTTCAATCTGGAAAATCCATCACATTGTTGTCCAACAACTGAACAGAGGGCGAGGGCAGCTACTAGCAATCAACTTCcccactttctttcttccaacaGAAATGGAACTGACCCTGTGGCTTTTAGATGTGACAATAGTTTTACTatacaagaaaaagatataacGTATTGCATTGACCAAGGCTGCAATTCTCTAAGCTGTTGCAGAAAGAATTCCCATAATCCAATTGCAGGAGAGGAAGTTTCTGAACGCAATTCCAATGCTCTTGATAgtgaaatttttgaatataacaGCAGTATTGGTGTTGATTTCCCATTGCCGTTGCTACTCTATTCTTTGGCTGAGGTCCAAGGCTACATATTCAATCTGGCGAAAGATCAGAATGGTTGTCGCTACCTACAAAGGATTGTTGATGAAGGAACCAGTGAAGCTATGCAAATAGTATTCGATGGAATAATACATAATGTTGTTGATCTTATGATAGACCCTTTTGGTAATTATCTTGTGCAGAAATTGTTGGATGTATGCGGAGAAGAAATGAAATCACAGATTGTGTTCATGGTGACTGAAGAACCAGGGCAGCTTGTCAAAATCTCTTTAAACACCCACGGCACACGGGTGGTACAAAAGTTGATTGATACTCTCAACACTAGGCAACAAATATCACTAGTCATGTCAGCACTTCGACCAGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTCATACAACGTTGTTTGCAACGCCTTACCTGTCAAGATAATGAGTTTATTTTTGATGCCGCTGCAAAGTTCTGTGTTGACATAGCAACTCATCGACATGGATGTTGTGTACTGCAACGTTGCATTGATAAAGCGACAGGGAAATATCGAGATAAGCTGGTCACAGAAATATGTAGGCACGGGCTTCTCCTTGCTCAAGATCCTTTTGGAAATTATGTTGTTCAGTATATTATAGAGATGCAGATCCCAGCTGCCTCTGCCAAGCTAATTTCTCTGTTCAAAGGGAACTATGTTAACCTCTCAACACAAAAATTTAGCAGTCATGTGGTTGAAAAATGTCTAAAGCATGTGGCAGAGAGCAGACCAAGAATCGTCCGAGACTTGATGGCTGTATCCAACTTTGAACAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCAGTCAGCTCTTGCAGTCACCAAGGGCTCTCTTCATGCATCGCTGGTTGAAGCAGTTCGCCCTTACAAAATCTTGCGGACCAGCCCTTATTGCAAGAGGATTTTCTCGGGAAATCTGCTTAAGAATTA 2201 0.4035 MSRISEKNKSYTDNLKMNEELVQWWNGIPNAQCLNLHRRQPEHVSISSPVSRVSLTPKSPASNSFSNGYHFAGDACPYPDVKHQTLNDHYSTKLDSDSSDFCFENNISANWENDLGLSENFLRMNITDGQGNGTRIKGQKMGSHGFGSQTYSLDANIPTFTESGCSYDGFQNGVVGITSSNRVVSPSLIHDRKRSLPCSGKGYAFGTSVESSLAHDQSSASYLGSSWKRNQLLYHLNLMEQEKKQGSICDGQVQLQKSFTPGPYLCDGYMNSTSCGRNHEGGCNGKNTMKFSEWMHPTKLAFNLENPSHCCPTTEQRARAATSNQLPHFLSSNRNGTDPVAFRCDNSFTIQEKDITYCIDQGCNSLSCCRKNSHNPIAGEEVSERNSNALDSEIFEYNSSIGVDFPLPLLLYSLAEVQGYIFNLAKDQNGCRYLQRIVDEGTSEAMQIVFDGIIHNVVDLMIDPFGNYLVQKLLDVCGEEMKSQIVFMVTEEPGQLVKISLNTHGTRVVQKLIDTLNTRQQISLVMSALRPGFLDLIKDLNGNHVIQRCLQRLTCQDNEFIFDAAAKFCVDIATHRHGCCVLQRCIDKATGKYRDKLVTEICRHGLLLAQDPFGNYVVQYIIEMQIPAASAKLISLFKGNYVNLSTQKFSSHVVEKCLKHVAESRPRIVRDLMAVSNFEQLLQDPYANYVIQSALAVTKGSLHASLVEAVRPYKILRTSPYCKRIFSGNLLKN 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02733 733 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 34 732 - -
Bva06g02733 733 CDD Pumilio 419 727 IPR033712 GO:0003723
Bva06g02733 733 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 390 733 IPR033133 GO:0003723
Bva06g02733 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 671 708 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 416 451 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 564 599 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 600 635 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 636 670 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 528 563 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 491 526 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 452 487 IPR001313 GO:0003723
Bva06g02733 733 SMART pum_5 673 708 IPR001313 GO:0003723
Bva06g02733 733 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 34 732 - -
Bva06g02733 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 564 599 IPR001313 GO:0003723
Bva06g02733 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 488 527 IPR001313 GO:0003723
Bva06g02733 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 452 487 IPR001313 GO:0003723
Bva06g02733 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 528 563 IPR001313 GO:0003723
Bva06g02733 733 Gene3D - 411 728 IPR011989 -
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 421 454 IPR001313 GO:0003723
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 640 661 IPR001313 GO:0003723
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 533 563 IPR001313 GO:0003723
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 607 623 IPR001313 GO:0003723
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 569 602 IPR001313 GO:0003723
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 456 486 IPR001313 GO:0003723
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 495 525 IPR001313 GO:0003723
Bva06g02733 733 Pfam Pumilio-family RNA binding repeat 680 695 IPR001313 GO:0003723
Bva06g02733 733 SUPERFAMILY ARM repeat 414 726 IPR016024 -
Bva06g02733 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 600 635 IPR001313 GO:0003723
Bva06g02733 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 416 451 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02733 Bva-Chr6 17182583 17187422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02733 - - qsu:112011356 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02200 12 16958618 16963028 Bva06g02733 06 17182583 17187422 BWGD
Bva06g02733 06 17182583 17187422 Bva06g02733 06 17182583 17187422 ECH