Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02195 ATGGCAGAGAAGCAGAAGAACAAGGTGGAGAATGAAGTGGGTTGTGGGTTTATGGGAATAATTTTCCAACTCAGAAATCATAGGCTGAGAAAATCATCTGTGCATTCCCTCCCCATGAAGCCAACCAACATTGTCGGCAACGATCTGCGCAAAGATGAATCTAAAAAACCTCTCACTCCCAGTTACGAATCCAGAAATTCAGAACAGAAAGCGCCCAGAAAGAGCACCTCTGGCTCTGGTCATCCAACACCTCCTGCTCACCGAAACAACCAAAATCGGAGACCATCAAATGCTGCAAGGAGCTCAACGTCATCGTCTGGTAATTCAACCCATTTAAAGACCCAACAGAGCCAGGAAATGAACGATGATAGCAATCTAAGGAGAGAGTCCACCGGAAACACTCTGGAACTTGCAAGGACAAGCACTGGTCAGCAGCGAGACAAGGAGAACAGAGCCCAGGTCAAAGTTACAGGGAATTTACTTGTACATAACAGTCCTAGAACTAACACAAAGATACTAGAATCCCCTCCTAGGAATAAAGATCCTACTTGTTACAACAACGTTAGTATGGGCGTGATGGGCAATATTGTGAGGAAGAATAGTGATGAATTTCGAAGTCCAAGGAACAGAATGGACCCTGAGGCGTTGAAGTGTTTGGGAAATGAATTATACAAGCAGGGAAGATTTAAAGAGGCTTTGTGTTTCTATGACCGAGCAATTACTCTTGATTCCAATAAAGCAACGTATCATTGCAATAAGAGCGCAGCTTTAATTGGTTTAGGCCGGCTTCTCGAGGCCATTGTTGAGTGCGAGGAAGCTATTCGGCTGGAGCCTTCTTATAACAGAGCCCACCACCGTTTGGCAACATTATATATAAGATTGGGAGAAGCCGAAAAGGCACTGAATCATTGCAATCCCACAACCCCATATGCTGAGACAATACTCGCTTTCCAAGCTCAGGCTCTTGAAAATCACCTTAAAAATTGCAGTGAGGCCCGGAAAGTGAGTCAATGGAACACTGTACTAAAGGAGACACAATCTGCAATATCATTAGGAGCTGATTCAGCTCCACAGGTTTATGCTCTACAAACTGAAGCCTTATTGAAGCTCCTCAGACACCAAGAGGCTAATGTTACTCATAAGAAAATTCccaaattttctcttaattggTGTACCAAGCTTTTTGGTCCTGTTGCTACTGCCTACCTGCTGATGATAGACGCTCAGGTTCACTTGGCATCAGGCAGGTTCGAGGATGCGATTAAAGCAGCTGAGCAAGCAGCTAGAGTTGATCCTAGCAACAAAGAGGTGAGCACAGTGGTAAAGAAGGCCAGAGCAGTGGCATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATGCGGCGTATACAACCAAGGGCTAGAACATGATCCAAACAACGCTGTTTTGCTATGCAACAGAGCAGCATGCCGTTCTAAGTTAGGCCAATTCGAGAAAGCAATTGAGGACTGTAATGCAGCCCTTACAACTCAACCTCATTATCGCAAGGCAAGGTTAAGGAGGGCAGATTGCAATGCCAAGtTGGAACGATGGGAAGCCGCCATTCAAGACTATGAAATGCTGATAAGAGAAAAGCCAGGGGATGAGGAGGTGGCCAGGGCTCTGTTTGAGGCCCAGCTCCAACTCAAGATGCTGCGCGGTGAAGATATTAAGGACTTAAAATTTGgttcaaatttgtttttcatctCGAGCAATGATCGCTTTAGACATTATGTTACCTCACCCGGGATGTCCGTGGTGCTTTTTTGCAACAAGGCCACCCACAAGCAGGTATTGCTGGTGCTGGAGCAAACCTGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAGATTGAAGACCATCCCTACTTGGCAAAATCAGAAGGTGTGAGCTCCGTCCCAGCcttcaaaatatacaaaaatgggTCAAGAGGCAAGGAAATTCCAGGCAATAATGGTGACTTATTGGAAAAATCAGTAAAACTGTACAGCAGCTG 2039 0.4429 MAEKQKNKVENEVGCGFMGIIFQLRNHRLRKSSVHSLPMKPTNIVGNDLRKDESKKPLTPSYESRNSEQKAPRKSTSGSGHPTPPAHRNNQNRRPSNAARSSTSSSGNSTHLKTQQSQEMNDDSNLRRESTGNTLELARTSTGQQRDKENRAQVKVTGNLLVHNSPRTNTKILESPPRNKDPTCYNNVSMGVMGNIVRKNSDEFRSPRNRMDPEALKCLGNELYKQGRFKEALCFYDRAITLDSNKATYHCNKSAALIGLGRLLEAIVECEEAIRLEPSYNRAHHRLATLYIRLGEAEKALNHCNPTTPYAETILAFQAQALENHLKNCSEARKVSQWNTVLKETQSAISLGADSAPQVYALQTEALLKLLRHQEANVTHKKIPKFSLNWCTKLFGPVATAYLLMIDAQVHLASGRFEDAIKAAEQAARVDPSNKEVSTVVKKARAVASARMSGNLLFKASKFTEACGVYNQGLEHDPNNAVLLCNRAACRSKLGQFEKAIEDCNAALTTQPHYRKARLRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVSSVPAFKIYKNGSRGKEIPGNNGDLLEKSVKLYSS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02195 679 CDD TRX_family 588 675 - -
Bva12g02195 679 Pfam Tetratricopeptide repeat 481 514 IPR001440 GO:0005515
Bva12g02195 679 SUPERFAMILY TPR-like 212 436 IPR011990 GO:0005515
Bva12g02195 679 ProSiteProfiles TPR repeat profile. 401 434 IPR019734 GO:0005515
Bva12g02195 679 SUPERFAMILY TPR-like 452 563 IPR011990 GO:0005515
Bva12g02195 679 SUPERFAMILY Thioredoxin-like 565 669 IPR036249 -
Bva12g02195 679 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Bva12g02195 679 SMART tpr_5 247 280 IPR019734 GO:0005515
Bva12g02195 679 SMART tpr_5 281 314 IPR019734 GO:0005515
Bva12g02195 679 SMART tpr_5 515 548 IPR019734 GO:0005515
Bva12g02195 679 SMART tpr_5 401 434 IPR019734 GO:0005515
Bva12g02195 679 SMART tpr_5 481 514 IPR019734 GO:0005515
Bva12g02195 679 SMART tpr_5 447 480 IPR019734 GO:0005515
Bva12g02195 679 SMART tpr_5 213 246 IPR019734 GO:0005515
Bva12g02195 679 Pfam TPR repeat 220 255 - -
Bva12g02195 679 Pfam Tetratricopeptide repeat 517 546 IPR019734 GO:0005515
Bva12g02195 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 678 IPR044534 -
Bva12g02195 679 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 678 - -
Bva12g02195 679 Gene3D Tetratricopeptide repeat domain 211 566 IPR011990 GO:0005515
Bva12g02195 679 MobiDBLite consensus disorder prediction 60 141 - -
Bva12g02195 679 Coils Coil 514 541 - -
Bva12g02195 679 Pfam Thioredoxin 611 671 IPR013766 -
Bva12g02195 679 MobiDBLite consensus disorder prediction 33 150 - -
Bva12g02195 679 Gene3D Glutaredoxin 576 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02195 Bva-Chr12 16923771 16926633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02195 182 300 EF-hand Containing Proteins AT1G05150 28.689 2.22e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02195 K09527 - gmx:100814381 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02195 12 16923771 16926633 Bva06g02737 06 17210578 17213827 BWGD
Bva12g02195 12 16923771 16926633 Bva12g02195 12 16923771 16926633 ECH