Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01992 ATGGCATCGAAGCGGATCTTGAAGGAGCTCAAGGATTTACAGAAGGATCCTCCTACATCTTGCAGCGCTGGTCCTGTTGCTGAAGACATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGATAGTCCTTATGCTGGAGGTGTTTTCTTAGTTACTATTCATTTTCCTCCAGATTACCCCTTTAAGCCACCCAAGGTTGCATTCAGGACAAAGGTATTCCACCCAAATATAAATAGCAACGGAAGCATTTGTCTTGACATATTGAAGGAGCAGTGGAGCCCTGCTTTAACCATTTCCAAGGTGTTGCTTTCAATTTGCTCTCTGTTGACGGACCCTAATCCTGATGATCCTTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACAAGTACGAGTCAACTGCAAGAAGCTGGACCCAGAAATATGCCATGGGTTG 446 0.4529 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01992 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Bva12g01992 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Bva12g01992 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Bva12g01992 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Bva12g01992 148 SMART ubc_7 4 147 - -
Bva12g01992 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Bva12g01992 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Bva12g01992 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Bva12g01992 148 CDD UBCc 3 142 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01992 Bva-Chr12 15769983 15772997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01992 2 114 Miscellaneous Gene Families AT3G17000 36.975 1.24e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01992 - K06689 gmx:100499824 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01992 12 15769983 15772997 Bva06g02944 06 18332392 18334479 ECH
Bva02g01997 02 21071536 21074774 Bva12g01992 12 15769983 15772997 ECH
Bva08g01893 08 12735929 12738723 Bva12g01992 12 15769983 15772997 ECH
Bva12g01992 12 15769983 15772997 Bva12g01992 12 15769983 15772997 ECH