Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01893 ATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAAGACCTCCAGAAAGACCCTCCTACCTCCTGCAGTGCTGGTCCAGTAGCAGAGGATATGTTTCATTGGCAAGCCACGATAATGGGTCCCTCTGATAGTCCATATGCTGGTGGTGTTTTCCTAGTCACTATTCATTTTCCTCCTGACTATCCATTCAAGCCACCTAAGGTTGCATTTAGGACTAAGGTTTTTCATCCAAACATCAACAGCAATGGTAGTATTTGTCTTGACATCTTAAAGGAGCAATGGAGCCCTGCTTTGACCATATCTAAGGTTTTGCTTTCCATCTGTTCGCTCTTGACGGATCCGAACCCAGATGATCCCTTGGTGCCTGAGATTGCTCATATGTACAAGACAGACAGGGCCAAGTATGAGACCAATGCAAGGAGTTGGACCCAGAAGTATGCCATGGGCTA 446 0.4664 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETNARSWTQKYAMG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01893 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Bva08g01893 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Bva08g01893 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Bva08g01893 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Bva08g01893 148 SMART ubc_7 4 147 - -
Bva08g01893 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Bva08g01893 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Bva08g01893 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Bva08g01893 148 CDD UBCc 3 142 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01893 Bva-Chr8 12735929 12738723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01893 2 114 Miscellaneous Gene Families AT3G17000 36.975 5.29e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01893 K06689 - qsu:112032082 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01893 08 12735929 12738723 Bva12g01992 12 15769983 15772997 ECH
Bva08g01893 08 12735929 12738723 Bva06g02944 06 18332392 18334479 ECH
Bva08g01893 08 12735929 12738723 Bva08g01893 08 12735929 12738723 ECH