Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02000 ATGCGAGTGAGAGAAATGCATCCCTTATGCTGTATCTCCCTAGAGAGTCCCGGAATCGGGAACCAATCCCCCGAGGCCTCACTTTCCAGAACTATGAGTCTGCCGGCAAGTTTCGCCGCCGCCTCCCGCAGCGGATCTAATGACAATGCCGGCGTTCGCCCTCAGGGTTCGGAGGCTACTTTTGCCGGCATACTTTACAAGTGGACCAATTACGGCAAAGGGTGGAGATCCCGATGGTTCCTCTTGAAGAATGGCGTCCTCTCTTATTCGAAGATCCGCTGGCCGGAGAATCTGAATCTTCTAACTCCGACCGATGACGTCAAGCTGATAGGAGAAATTTCCACCAATCGACTAGCAAGAATGGACGGGGGGAATACCATGAGAGGGAAGCACCAGAAAAGTGCTTCTGGCGTGGTCCATCTCAAGATCTCGTCATTTAGAGAAAGCAAGTCAGATGATAGGCGGTTCTATATATTTACAGCAACTAAGACTCTCCATCTGAGAACCGATTCAAGGAGAGATCGGGTCGCGTGGATACAAGCTCTAGTGTCTACTCGTAGCCTTTTTCCTCTTCCATTACTCAGTAATAACCTTTCCCTTGTTCCAAAAGATATATCTATTTCCACTGAGAAGCTTAGAAAACGCTTGCTTGAAGAGGGAACCGGTGAAAACCTTGTTAAGGAGTGCGAGCAAATCATGCTCTCTGAGTTTTCGGAAATTCAAGGACAGCTTAAAGTTCTTTGTGAGGAACGATCAAATTTACTCGACACAATAAGACAGTTGGAGGCAGATTATATTGAACCTGAGGCCTCTGGAATTCATAATGGTGAATACCAATTAACAAAGCATGAATTATCAAGTCTAGGACGTGGAAAATACAGTGAATGGAGTCCAACTGAATCATCCGATGATATCGAGAAACAAGAGATGGATGAAATCTCAGATCAAGATGAAATCTCATATTATGACACTACAGATTATTTTACTGAAACTGATATGTTATATGGACCGAGGGGAGCTTTGGACCAGGTAAACAAGTCTAGGGAAACTAATGGGCAATGCATTGATGTGGAAAAAATTCAATCCGAAAAGGCCGTCAATAATTGTAGGTATCCTCCGATAGCAAGAAGGAAAAAGCTTCCAGATCCTGCCGAGAAAGAAAAGGGTGTTAGTCTTTGGTCAATGATTAAAGACAGCGTGGGAAAGGATCTCTCACGAGTTTGTCTTCCTGTATACTTTAATGAGCCAATATCATCCCTTCAGAAATGTTGTGAGGATATGGAGTACTCCTTTCTTTTGGATCAAGCCTACGAACATGGAAAATCAgGAAATAGTCTCCTCCGGATACTGAATGTTGCTGCATTTGCAGTGTCTGGGTATGCATCATCTGAAGGCAGGCATTGTAAACCCTTTAATCCTTTGTTAGGGGAAACTTATGAAGCTGACTTTCCTGATAAAGGAATTCGCTTCTTTTCAGAGAAGGTCAGTCACCATCCGACGCTCATTGCCTGTCACTGTGAAGGTAGAGGGTGGAGATTTTGGGGTGACAGCAACATCCGTTCAAAGTTTTGGGGAAGGTCGATACAGCTTGATCCAGTGGGTGTTCTGACCCTGGAGTTTGATGATGGTGAAATCTTTCAGTGGAGCAAGGTCACCACATcaatttataatcttatctttggaaaaatatattgcGATCATCATGGGAACATGGATATACGTGGCAATCGCCAATATTCATGCAGACTCAAGTTCAAAGAGCAGTCAATTATTGACCGAAATCCTCATCAGGTGCATGGATTTGTTGAAGATGTAACGGGCAAAAAGATTGCCACATTATTTGGCAAGTGGGATGAGAGtatgtattatattaatgGTGATTATGGGAGCATGAAGCCAAAAGGTTTCCCTTCATCCGATGCGTCTTTGTTGTGGAAAAGGACCATGCCTCCAACAAATCTCACTCGATACAACATGACATCTTTTGCAATCACATTGAACGAGCTAACTCCAGGATTGAAGGAGAAGCTTCCACCCACGGATTCCAGGCTTCGGCCAGATCAGCGGTATCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAGAAACAGAGGTTGGAAAAGAGGCAAAGAATGTcaagaaaaatacaagaaaatggTTGGAAGCCAAGATGGTTTCAAAGAGAAGGTGAAAATGGAACATTGCGTTATGTAGGAGGGTATTGGGAAGCCAAGCAACTGGGAAGATGGGATGGCTGCCCAAGTATATTCAGTGAATTTAACGAAGACATTGTCAATCCTTTAGATGCAGCTTG 2315 0.4307 MRVREMHPLCCISLESPGIGNQSPEASLSRTMSLPASFAAASRSGSNDNAGVRPQGSEATFAGILYKWTNYGKGWRSRWFLLKNGVLSYSKIRWPENLNLLTPTDDVKLIGEISTNRLARMDGGNTMRGKHQKSASGVVHLKISSFRESKSDDRRFYIFTATKTLHLRTDSRRDRVAWIQALVSTRSLFPLPLLSNNLSLVPKDISISTEKLRKRLLEEGTGENLVKECEQIMLSEFSEIQGQLKVLCEERSNLLDTIRQLEADYIEPEASGIHNGEYQLTKHELSSLGRGKYSEWSPTESSDDIEKQEMDEISDQDEISYYDTTDYFTETDMLYGPRGALDQVNKSRETNGQCIDVEKIQSEKAVNNCRYPPIARRKKLPDPAEKEKGVSLWSMIKDSVGKDLSRVCLPVYFNEPISSLQKCCEDMEYSFLLDQAYEHGKSGNSLLRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGIRFFSEKVSHHPTLIACHCEGRGWRFWGDSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSIYNLIFGKIYCDHHGNMDIRGNRQYSCRLKFKEQSIIDRNPHQVHGFVEDVTGKKIATLFGKWDESMYYINGDYGSMKPKGFPSSDASLLWKRTMPPTNLTRYNMTSFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEKANMEKQRLEKRQRMSRKIQENGWKPRWFQREGENGTLRYVGGYWEAKQLGRWDGCPSIFSEFNEDIVNPLDAA 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02000 771 Coils Coil 244 264 - -
Bva11g02000 771 SMART PH_update 59 189 IPR001849 -
Bva11g02000 771 Gene3D - 688 746 - -
Bva11g02000 771 Gene3D - 477 643 - -
Bva11g02000 771 ProSiteProfiles PH domain profile. 58 187 IPR001849 -
Bva11g02000 771 Pfam Oxysterol-binding protein 391 745 IPR000648 GO:0008289
Bva11g02000 771 Pfam Pleckstrin homology domain 66 182 - -
Bva11g02000 771 SUPERFAMILY PH domain-like 57 184 - -
Bva11g02000 771 SUPERFAMILY Oxysterol-binding protein-like 386 761 IPR037239 -
Bva11g02000 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 333 - -
Bva11g02000 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 360 762 - -
Bva11g02000 771 Gene3D - 54 188 IPR011993 -
Bva11g02000 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 333 IPR000648 GO:0008289
Bva11g02000 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 360 762 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02000 Bva-Chr11 16951213 16958098 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02000 K20456 - gmx:100819924 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00299 08 1470540 1478735 Bva11g02000 11 16951213 16958098 BWGD
Bva11g02000 11 16951213 16958098 Bva11g02000 11 16951213 16958098 ECH