LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00299	ATGCGAGTGAAGGAAATGCACCCCTTGTGCTGTATCTCCCTCGAGAGTCCAGGAATCGGGAACCAATCCCCCGAGGCCTCACTTTCCAGAACTAGGAGTCTGCCGGCAAGTTTCGCGGCCGCCTCCCGCGCCGGATCTGATGGCAATGCCGGTGTTCGGATTCAAGGATCGGAGACAACTGTTGCCGGTATACTTTACAAATGGACCAATTACGGCAAAGGGTGGAGATCTCGATGGTTCCTTTTGAAGAATGGCGTCCTCTCTTACTCGAAGATCCGCTGGCCGGAGAATCTGAATCTTCTAACGCCGACCGACGAAGTCAAGCTGATAGGAGAAATTTCCACCAACCGATTAGCAAGGATGGAGACCGGGAATACCATGAGACGGAAGCACCAGAAATCAGCTTCCGGAGTAGTCCATCTCAAGATCTCATCATTTAGAGAGAGCAAGTCAGATGATCGGcggttttatatatttacggCAACGAAGACTCTCCATCTGAGAACCGATTCAAGGAGAGATCGGGTTGCTTGGATACAAGCCTTAGTCTCTACTCGTAGCCTCTTTCCTCTTCGATCACTCAATGATAACTTCTCCCTTACTTCCAGAGATGTATCTATTTCTACTGAGAGGCTTAAGAAACGCTTGCTTGAAGAGGGAACCAGTGAAAACCTTGTAAAGGAGTGCGAGCAAATCATGCTCTCTGAATTTTCGGAAATTCAAGGACAACTTAAGGTTCTTTGTGAAGAACGATCAACTTTGCTCGACACAATAAGACAGTTGGAGGCAGCTTATAATGAACCTGAGGCCTCTGGACTCCATAATGGTGAATACCAATTATCGAAGAATGAATTATCAAGTCTAGGGCGTGGAAAATATAGCGAATGCAGTACAACTGAATCATCAGATGATATTGAGAAACAAGACATGGAGGAAGTGTCAGACGAAGATAGAATCTCATATTATGATGCTGCAGAGTATTTTACCGAAACTGGTATTTTATACGGATCGAATGGAGCTTCGGATCAGGTAAACAAGTTGGGGGATACTAACGGCCAATGCATTGATGTGGAAAAAATTCAATCCGAACAGGTAGTAAATATTTCTGGGTATCCTCTGATAGCAAGAAGGGAAAAGCTTCCAGATCCtgtggagaaagaaaagggagtTAGTCTTTGGTCAATGATCAAAGACAACGTGGGAAAAGATCTCTCACGAGTTTGTCTTCCTGTATACTTTAATGAGCCGATATCATCCCTTCAGAAATGTTGTGAGGACCTGGAGTACTCCTATCTTTTGGATCAAGCTTATGAGCATGGAAAATCAgGAAACAGTCTCCTTCGGATACTGAATGTTGCTGCATTTGCAGTCTCTGGTTATGCATCATCTGAAGGCCGGCATTGTAAACCCTTTAATCCTTTGTTAGGGGAAACTTATGAAGCTGACTTTCCTGATAAAGGAATTCGCTTCTTTTCAGAGAAGGTCAGTCACCATCCAACGCTCATTGCGTGCCACTGTGAAGGTAGAGGATGGAGGTTTTGGGGTGACAGCAACATCCGTTCAAAATTTTGGGGAAGGTCAATACAGCTTGATCCAGTTGGTGTTCTTACCGTGGAGTTTGATGATGGTGAAATTTTTCAGTGGAGCAAGGTCACCACGACAATCTATAATCTTAtccttggaaaaatatattgtgaTCATCATGGGAATATGGACATAAGAGGCAATCGCCAATATTCATGCAGACTCAAGTTCAAAGAGCAGTCTATCATTGACCGAAATCCTCGTCAGGTGCATGGATTTGTTGAAGATGTCACGGGCAAAAAGGTTGCCACATTATTTGGCAAGTGGGATGACAGtatgtattatattaatgGTGATGGGAGTATGAAGCCAAAAGGTTTCCCTTCATCTGATGCGTCTTTGTTGTGGAAAAGGACCATGCCTCCTACAAATCTCACTCGTTACAACATGACATCTTTTGCAATCACATTGAACGAGCTAACTCCAGGATTGAAGGAGAAGCTTCCATCCACGGATTCCAGGCTTCGGCCAGATCAGCGGCATCTAGAGAATGGGGAATACGAGAAGGCTAATACGGAGAAACAGAGGTTGGAAAAGAGGCAAAGAATGTcaagaaaaatacaagaaaatggTTGGAAGCCTAGATGGTTCCAAAGAGAAGGTGAAAATGGAACATTTCGTTTTGTGGGAGGGTATTGGGAAGCCAGACAACTGGGAAGATGGGATGGCTGCCCAAATATATTTGGCGAATTTAACCAAGACATTGTCAGTCCTTTAGATGCAGCTTG	2312	0.4291	MRVKEMHPLCCISLESPGIGNQSPEASLSRTRSLPASFAAASRAGSDGNAGVRIQGSETTVAGILYKWTNYGKGWRSRWFLLKNGVLSYSKIRWPENLNLLTPTDEVKLIGEISTNRLARMETGNTMRRKHQKSASGVVHLKISSFRESKSDDRRFYIFTATKTLHLRTDSRRDRVAWIQALVSTRSLFPLRSLNDNFSLTSRDVSISTERLKKRLLEEGTSENLVKECEQIMLSEFSEIQGQLKVLCEERSTLLDTIRQLEAAYNEPEASGLHNGEYQLSKNELSSLGRGKYSECSTTESSDDIEKQDMEEVSDEDRISYYDAAEYFTETGILYGSNGASDQVNKLGDTNGQCIDVEKIQSEQVVNISGYPLIARREKLPDPVEKEKGVSLWSMIKDNVGKDLSRVCLPVYFNEPISSLQKCCEDLEYSYLLDQAYEHGKSGNSLLRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGIRFFSEKVSHHPTLIACHCEGRGWRFWGDSNIRSKFWGRSIQLDPVGVLTVEFDDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRQYSCRLKFKEQSIIDRNPRQVHGFVEDVTGKKVATLFGKWDDSMYYINGDGSMKPKGFPSSDASLLWKRTMPPTNLTRYNMTSFAITLNELTPGLKEKLPSTDSRLRPDQRHLENGEYEKANTEKQRLEKRQRMSRKIQENGWKPRWFQREGENGTFRFVGGYWEARQLGRWDGCPNIFGEFNQDIVSPLDAA	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00299	770	MobiDBLite	consensus disorder prediction	675	713	-	-
	Bva08g00299	770	Pfam	Oxysterol-binding protein	391	744	IPR000648	GO:0008289
	Bva08g00299	770	Gene3D	-	687	744	-	-
	Bva08g00299	770	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A	359	761	-	-
	Bva08g00299	770	SUPERFAMILY	PH domain-like	57	184	-	-
	Bva08g00299	770	SMART	PH_update	59	189	IPR001849	-
	Bva08g00299	770	SUPERFAMILY	Oxysterol-binding protein-like	386	761	IPR037239	-
	Bva08g00299	770	MobiDBLite	consensus disorder prediction	677	713	-	-
	Bva08g00299	770	Coils	Coil	688	708	-	-
	Bva08g00299	770	MobiDBLite	consensus disorder prediction	291	315	-	-
	Bva08g00299	770	Pfam	Pleckstrin homology domain	63	182	-	-
	Bva08g00299	770	Coils	Coil	244	264	-	-
	Bva08g00299	770	ProSiteProfiles	PH domain profile.	58	187	IPR001849	-
	Bva08g00299	770	Gene3D	-	477	650	-	-
	Bva08g00299	770	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A	4	341	-	-
	Bva08g00299	770	Gene3D	-	55	188	IPR011993	-
	Bva08g00299	770	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	4	341	IPR000648	GO:0008289
	Bva08g00299	770	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	359	761	IPR000648	GO:0008289

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00299	Bva-Chr8	1470540	1478735	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00299	K20456		-	gmx:100819924	1272.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00299	08	1470540	1478735	Bva11g02000	11	16951213	16958098	BWGD
	Bva08g00299	08	1470540	1478735	Bva08g00299	08	1470540	1478735	ECH