LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g01611	ATGTGGCGGTGCGTAGCTCGTGGACTTCGAGTACCAGCTTCCAAGAGATCCTCTCCAAATGAATCACTTAGATCTCACATTTCGAGATTTTTCTCGACTGGGGGAAGCTCTGAGGTGGCTGGAGGTAAATATACTGTGGTAGATCACACTTATGATGCAGTTGTTGTAGGCGCTGGTGGGGCAGGGTTGAGAGCTGCTATTGGACTTTCAGAACATGGGTTTAATACTGCTTGCATTACAAAGCTTTTCCCTACTCGTTCGCACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTACGACACAGTCAAGGGGAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCTGTTATAGAGCTTGAGAATTATGGATTACCATTTTCTCGAACTGAGGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAAAGTCTGAATTTTGGAAAAGGTGGTCAGGCTTACCGATGTGCTTGTGCTGCTGATCGAACTGGACATGCATTATTGCACACTCTCTATGGCCAGGCTATGAGACATAATACACAATTTTTTGTGGAATATTTTGCTTTGGATCTTTTGATGAATAGTGATGGTACTTGTCAAGGAGTAATTGCATTGAATATGGAAGATGGAACACTGCATCGGTTCCAAGCTGCTTCTACAATTTTGGCCACAGGGGGTTATGGTAGGGCATATTTTTCTGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCTATGGTTGCACGTGCTGAACTCCCACTCCAGGATCTGGAGTTTGTGCAATTTCATCCTACAGGTATATATGGAGCTGGTTGCCTGATTACAGAAGGTTCTCGTGGAGAAGGTGGAATTCTTAGGAACAGTGAGGGTGAGCGATTCATGGAACGGTATGCCCCTACTGCGAAGGACCTTGCATCTAGAGATGTTGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGCCGTGGTGTAGGACCTCTGAAGGACCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGGCTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCCGGTGTTGATGTTACAAAGGAACCAATCCCTGTTTTGCCAACAGTGCACTATAACATGGGTGGCATTCCCACAAACCATCACGGAGAGGTTGTTACAATTAAAGGTGACAATCCAGATTCAGTAGTACCTGGATTGATGGCTGCTGGTGAAGCAGCCTGTGCATCCGTCCATGGTTCCAATAGGCTTGGTGCAAATTCACTTCTGGACATTGTTGTTTTTGGCAGAGCTTGTGCAAATAGAGTTGCAGAAATCCAGAAGCCAGGTGAGAAACAAAAGCCCTTGGAGAAGGATGCTGGTCAGAAGACAATAGCATGGCTGGACAAgttaagaaattcaaatggTTCTTTACCAACTTCACAAATTCGGTTGAATATGCAACGAATAATGCAAAACAATGTTGCTGTGTTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAACTAATCGATAAGGCATGGGAGAGCTTTCACGATGTTAAGTTGAAGGACCGGAGTCTGATATGGAACTCTGACCTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTTACGAAAAGAGATGATGAGAAATGGATGAAACACAGTTTGGGATACTGGGAGAATGAAAAGGCCCGGCTAGATTACAGGCCAGTGCACATGAATACATTGGACGAGGAGGTTGAATCATTCCCTCCCAAAGCTCGCGTGTATTG	1907	0.4473	MWRCVARGLRVPASKRSSPNESLRSHISRFFSTGGSSEVAGGKYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAELPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDSVVPGLMAAGEAACASVHGSNRLGANSLLDIVVFGRACANRVAEIQKPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSQIRLNMQRIMQNNVAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHSLGYWENEKARLDYRPVHMNTLDEEVESFPPKARVY	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g01611	635	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	280	398	IPR027477	-
	Bva11g01611	635	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	494	635	IPR037099	GO:0016491
	Bva11g01611	635	TIGRFAM	sdhA_forward: succinate dehydrogenase, flavoprotein subunit	49	635	IPR011281	GO:0006099\|GO:0016627\|GO:0050660
	Bva11g01611	635	PIRSF	SDHA_APRA_LASPO	42	625	-	-
	Bva11g01611	635	Gene3D	-	52	459	IPR036188	-
	Bva11g01611	635	Gene3D	-	475	585	-	-
	Bva11g01611	635	SUPERFAMILY	FAD/NAD(P)-binding domain	44	471	IPR036188	-
	Bva11g01611	635	ProSitePatterns	Fumarate reductase / succinate dehydrogenase FAD-binding site.	86	95	IPR003952	GO:0016491
	Bva11g01611	635	PANTHER	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	2	635	IPR030664	-
	Bva11g01611	635	Gene3D	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	290	393	IPR027477	-
	Bva11g01611	635	Gene3D	succinate dehydrogenase protein domain	586	635	-	-
	Bva11g01611	635	Pfam	FAD binding domain	52	448	IPR003953	-
	Bva11g01611	635	TIGRFAM	sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit	52	635	IPR014006	GO:0016627\|GO:0022900\|GO:0050660
	Bva11g01611	635	PANTHER	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	2	635	-	-
	Bva11g01611	635	Pfam	Fumarate reductase flavoprotein C-term	504	635	IPR015939	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g01611	Bva-Chr11	14879837	14885419	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g01611	K00234		-	gmx:100802169	1205.66

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00725	08	3763701	3769577	Bva11g01611	11	14879837	14885419	BWGD