Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00725 ATGTGGCGGTGCGTCGCTCGTGGACTTCGATTACCAGCTTCCAAAAGATCCACTCCAAATGACCCACTTAGATCTCACATTTCGAGATTTTTCTCAACTGGGGGAAACTCTGAAGTGGCTGGGGGTAAATATACTATAGTGGATCATACTTATGATGCAGTTGTTGTTGGTGCTGGCGGGGCGGGGTTGAGAGCTGCTATTGGACTTTCGGAACATGGATTTAATACTGCTTGCATTACTAAGCTTTTCCCTACTCGTTCGCACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCGTTGGGAAATATGAGTGAAGATGACTGGAGGTGGCACATGTACGACACAGTCAAGGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGAGAGGCACCAAAAGCAGTCATAGAGCTTGAGAATTATGGATTGCCATTTTCCCGAACTGAGGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAAAGCCTGAATTTTGGAAAAGGTGGTCAGGCATATCGATGTGCTTGTGCTGCTGATCGAACTGGACATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAGACATAATACACAATTTTTTGTGGAATATTTTGCTCTGGATCTTTTGATGAATAGTGATGGTAGTTGCCAAGGAGTGATTGCATTGAATATGGAGGATGGAACATTGCATCGGTTCCAAGCTGCTTCGACAATTTTGGCCACAGGGGGTTATGGTAGGGCTTATTTTTCTGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCTATGGTTGCACGAGCTGGACTCCCACTTCAGGATTTGGAGTTTGTGCAATTTCACCCGACAGGTATATATGGAGCTGGTTGCCTTATTACAGAAGGTTCTCGTGGAGAAGGTGGAATCCTCAGGAACAGTGAGGGTGAGCGTTTCATGGAAAGATATGCCCCTACTGCAAAAGATCTTGCATCTAGGGATGTTGTTTCAAGATCAATGACTATGGAAATTCGGGAGGGCCGTGGTGTAGGACCTCTGAAGGACCACATCTATCTCCACTTGAATCACTTACCCCCGGATGTGCTTAAGGAGAGGCTTCCTGGTATCTCAGAAACTGCTGCTATTTTTGCTGGTGTTGATGTTACAAAGGAACCGATCCCTGTTTTGCCAACAGTGCACTATAACATGGGTGGCATTCCCACAAACCATCATGGAGAGgTTGTTACAATTAAAGGTGACAATCCGGATTCAGTAGTACATGGATTGATGGCTGCTGGGGAAGCAGCTTGCGCATCTGTACATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTGGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCAAAAGCCAGGTGAGAAACAAAAGCCCTTGGAAAAGGATGCTGGTCAGAAAACAATTGCATGGCTagacaaattaagaaattcaaatggCTCTTTACCAACTTCACAAATTCGGTTGAATATGCAACGAATAATGCAAAGCAATGCTGCTGTGTTCCGTACACAAGAAACATTAGAAGAAGGTTgtcaattaattgataaagcGTGGGACAGCTTTCATGATGTTAAGCTGGAAGACAGGAGTCTgatatgGAATAGTGACCTGATTGAGACTATTGAGTTAGAAAATCTGTTGATAAATGCATGCATCACTATGCACTCTGCTGAAGCCAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGAAAAGAGATGACGAGAAATGGCTAAAACACACTGTGGGATACTGGGAGAAGGAAAAGGCCCGGCTAGATTATAGGCCAGTGCATATGAATACATTGGACGACGAGGTTGAATCATTCCCTCCTAAAGCTCGTGTGTATTA 1907 0.4389 MWRCVARGLRLPASKRSTPNDPLRSHISRFFSTGGNSEVAGGKYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDSVVHGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQKPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSQIRLNMQRIMQSNAAVFRTQETLEEGCQLIDKAWDSFHDVKLEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWLKHTVGYWEKEKARLDYRPVHMNTLDDEVESFPPKARVY 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00725 635 Gene3D - 52 459 IPR036188 -
Bva08g00725 635 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 280 398 IPR027477 -
Bva08g00725 635 Pfam Fumarate reductase flavoprotein C-term 504 635 IPR015939 GO:0016491
Bva08g00725 635 Gene3D succinate dehydrogenase protein domain 586 635 - -
Bva08g00725 635 Gene3D - 475 585 - -
Bva08g00725 635 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 52 635 IPR014006 GO:0016627|GO:0022900|GO:0050660
Bva08g00725 635 Pfam FAD binding domain 52 448 IPR003953 -
Bva08g00725 635 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 49 635 IPR011281 GO:0006099|GO:0016627|GO:0050660
Bva08g00725 635 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 86 95 IPR003952 GO:0016491
Bva08g00725 635 SUPERFAMILY FAD/NAD(P)-binding domain 44 471 IPR036188 -
Bva08g00725 635 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 2 635 IPR030664 -
Bva08g00725 635 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 494 635 IPR037099 GO:0016491
Bva08g00725 635 PIRSF SDHA_APRA_LASPO 42 625 - -
Bva08g00725 635 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 2 635 - -
Bva08g00725 635 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 290 393 IPR027477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00725 Bva-Chr8 3763701 3769577 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00725 K00234 - gmx:100802169 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00725 08 3763701 3769577 Bva11g01611 11 14879837 14885419 BWGD
Bva08g00725 08 3763701 3769577 Bva08g00725 08 3763701 3769577 ECH