Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01456 ATGGACGTGCGCCGCCGACCCATCAACACCGTCCGTTCAACTTCTGCCGGCGAACCTCTCAAAACCCGGAAACTCGGCCATGTTCCCCATGTGAAAGCTCCGGCCACGGATGCACAGGCACTGTTGGTACCTCTTTACCTCACCAATGGTATCTTCTTCAgtcttttcttctctgtgGCGTACTTTCTTCTCCACAGATGGCGCGAGAAGGTCCGCACTTCCACTCCTCTTCATGTCGTCACGCTGTCCGAGATTGCAGCTGTTGTGTCCCTCATCGCCTCCGTCATCTACCTTCTGGGTTTCTTCGGCATTGGCTTCGTCCATCCCATCTCTTCTCGCGCATCTTCTGATGACGAGCTCGAATTAGATGACGATGACAGCCTCATTACGAAAGATGATGGCCGCGCCCCTGGCCCTTGTCCGGCTGGTATCATAGATTGCTCTGTCATCTCATCTCCGCCTCAGAACCAGATGGTGGTTCCTGCAACGCCACCCAAAATAATCGACGATATCCCACTGTCTCTCACtgaggaagatgaagaaattgtCAAGTCAGTGGTTTCTGGGTCGATTCCTTCGTACTCGTTGGAATCGAAGCTCGGAGACTGTCGAAGAGCAGCGGCGATTCGGAAAGAGGCGGTGCAGAGAATAACGGGAAGATTGCTACATGGGCTGCCATTAGAAGGGTTCGATTATGAATCAATATTGGGACAATGCTGTGAGATGCCGATTGGGTACGTTCAGATCCCTGTTGGGGTTGCAGGGCCTTTGTTGCTGGATGGGATAGAGTACACAGTGCCCATGGCCACCACGGAAGGATGCCTTGTAGCTAGCACCAACAGAGGTTGCAAGGCCATTTATGTTTCTGGTGGAGCTACTTCCATGGTGCTTAGGGATGGGATGACCAGGGCTCCCGTTGTGAGGTTCGCTACTGCCAAAAGGGCGGCCGAGTTGAAGTTCTTCTTGGAGGATCCTCTCAATTTTGAATCTCTCTCTGTCATTTTCAACAAGTCAAGCAGATTTGCTAGGTTACAGAATATTCAGTGTGCAATGGCAGGGAAGAATTTGTACATTAGATTCAGTTGCAGCACCGGTGACGCCATGGGGATGAACATGGTATCAAAAGGCGTCCAAAATGTCCTTGATTTCCTTCAAACCGATTTCCCCGACATGGATGTCATTGGCCTCTCTGGAAATTTCTGTTCGGACAAGAAAGCAACAGCAGTAAATTGGATCGAAGGCCGTGGGAAGTCAGTGGTTTGCGAGGCTATAATCAAAGAAGATGTGGTAAAAAAAGTATTGAAGACTAACGTAGAGGCCCTTGTGGAGCTTAATATGCTTAAAAACCTTGTTGGCTCAGCCGTGGCTGGTTCTCTTGGAGGATTCAACGCCCATGCTAGCAATATTGTTTCTGCTATCTACATAGCCACTGGTCAGGATCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTGAACGACGGCAAGGACCTTCACATCTCTGTATCTATGCCCTCCGTTGAGGTGGGCACGGTTGGAGGGGGCACACAGCTCGCTTCTCAGTCAGCTTGTCTTAATTTACTTGGTGTCAAGGGTGCCAGCAAAGACTCTCCTGGTGCAAATTCTAGGCAACTGGCCACCGTTGTAGCTGGTGCTGTCCTTGCTGGAGAGCTTTCTCTTATGTCAGCTATCGCAGCTGGGCAACTCGTTCAAAGCCACATGAAATACAACAGATCTAGCAAGGATGTCACCAAAGCTGTCTCCTA 1781 0.4947 MDVRRRPINTVRSTSAGEPLKTRKLGHVPHVKAPATDAQALLVPLYLTNGIFFSLFFSVAYFLLHRWREKVRTSTPLHVVTLSEIAAVVSLIASVIYLLGFFGIGFVHPISSRASSDDELELDDDDSLITKDDGRAPGPCPAGIIDCSVISSPPQNQMVVPATPPKIIDDIPLSLTEEDEEIVKSVVSGSIPSYSLESKLGDCRRAAAIRKEAVQRITGRLLHGLPLEGFDYESILGQCCEMPIGYVQIPVGVAGPLLLDGIEYTVPMATTEGCLVASTNRGCKAIYVSGGATSMVLRDGMTRAPVVRFATAKRAAELKFFLEDPLNFESLSVIFNKSSRFARLQNIQCAMAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGLSGNFCSDKKATAVNWIEGRGKSVVCEAIIKEDVVKKVLKTNVEALVELNMLKNLVGSAVAGSLGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVSMPSVEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRQLATVVAGAVLAGELSLMSAIAAGQLVQSHMKYNRSSKDVTKAVS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01456 593 Gene3D - 175 249 IPR023282 GO:0004420
Bva11g01456 593 CDD HMG-CoA_reductase_classI 180 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Bva11g01456 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 568 581 IPR023076 GO:0004420
Bva11g01456 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 514 521 IPR023076 GO:0004420
Bva11g01456 593 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 176 572 IPR009029 GO:0015936|GO:0016616
Bva11g01456 593 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 179 583 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 593 - -
Bva11g01456 593 Gene3D - 300 416 IPR009023 -
Bva11g01456 593 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 179 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Bva11g01456 593 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 593 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 Gene3D - 250 578 IPR023074 GO:0004420
Bva11g01456 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 359 373 IPR023076 GO:0004420
Bva11g01456 593 Pfam Hydroxymethylglutaryl-coenzyme A reductase 207 583 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 300 416 IPR009023 -
Bva11g01456 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 502 523 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 266 286 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 448 474 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 357 375 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 239 260 IPR002202 GO:0004420|GO:0015936
Bva11g01456 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 397 422 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01456 Bva-Chr11 14143799 14147544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01456 1 591 Lipid Metabolism Gene Families AT1G76490 69.103 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01456 K00021 - nnu:104606863 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00983 08 5009818 5013581 Bva11g01456 11 14143799 14147544 BWGD