Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00983 ATGGACGTTCGCCGGCGACCTATTGACACCGTCCGTTCAAGCTCTGCTGGCGAACCTCTCAAACCCCGGAAACTTGCCCATGATCACCTGGTGAAAGCTCCGGCGGCGGATGTACAGGCACTGCCATTGGCGCCTCTTTACCTCACCAACGGGATCTTCTtcactcttttcttctctgtgGCGTACTTTCTTCTCCATAGATGGCGCGAGAAGATCCGCACTTCCACTCCTCTCCATGTCGTCACCCTGTCTGAGATTACAGCCATTGTATCCCTCATCGCCTCCGTCATTTACCTTCTGGGTTTCTTCGGCATTGGCTTTGTCCACCCCATCTCTTCTCGCGCATCTTCTGATGACGAGCTCGAATTAGATGACGATGACACCCTCATTACGAGAGATGATAGCCGCACACCTGGCCCTTGTCCAGCTGGTGTCATAGATTGTTCTGTCATCTCTTCTCCGCCTCAGAACCAGACCCAGAACCAGAGGGTGGTTCCAGCATCGTCACCCAAAATCATCGACAATACCCCGCTCTCTCTCTTGGAGGAGGATGAAGAAGTTCTCAAGTCAGTGGTATCTGGGTCGATTCCTTCGTACTCCTTGGAATCGAAGCTCGGAGATTGTCAAAGAGCAGCGGCGATCCGTAAAGAGGCGGTGCAGAGAACAACGGGAAGGTCTCTACAGGGGCTGCCGTTAGAAGGGTTTGATTATGAGTCAATATTGGGTCAGTGCTGCGAGATGCCGATTGGGTACGTTCAAATCCCTGTTGGGGTTGCAGGGCCATTGTTGTTGGATGGGAAGGAGTACACAGTGCCCATGGCCACTACGGAAGGTTGCCTTGTAGCGAGCACCAACAGAGGTTGCAAGGCCATTTATCTTTCTGGTGGAGCTACCTCCATCGTGCTCAGGGATGGGATGACCAGGGCTCCTGTTGTCAGGTTCGCAACTGCCAAAAGGGCGGCACAGTTGAAGTTCTTCTTGGAGGATTCTCTCAATTTTGAATCTCTCTCTGGCATTTTCAACAAGTCAAGCAGATTTGCGAGATTACAGAGTATTCAGTGTGCAATGGCAGGGAAGAATTTGTACATTAGATTCAGTTGCAGCACTGGTGACGCCATGGGGATGAATATGGTATCAAAAGGCGTCCAAAATGTCCTTGATTTCCTTCAAACCGATTTCCCTGACATGGACGTCATTGGCCTCTCCGGAAATTTCTGTTCGGACAAGAAAGCAGCAGCAGTAAACTGGATAGAAGGCCGAGGGAAGTCTGTGATTTGTGAGGCTATAATCAAGGAAGATGTGGTAAAGAAAGTATTGAAGACTAGCGTGGAGGCCCTGGTGGAGCTTAATATGCTTAAAAACCTTGCTGGCTCAGCCGTGGCTGGTGCTCTTGGCGGGTTCAATGCCCAAGCTGCCAATATTGTTACTGCTGTCTACATAGCCACTGGTCAGGATCCTGCCCAGAATGTGGAGAGTTCTCACTGTATCACCATGATGGAAGCTGTGAACGACGGCAAAGACCTTCACATCTCTGTCTCCATGCCCTCCGTTGAGGTGGGCACAGTTGGAGGGGGCACACAGCTCGCTTCTCAATCGGCTTGTCTTAATTTACTTGGTGTCAAGGGTGCCAGCAAAGGCTCTCCAGGTGCAAATTCTAGGCTATTGGCCACCATTGTAGCTGGTTCAGTCCTTGCCGGAGAGCTTTCGCTCATGTCAGCCATTGCAGCTGGGCAACTTGTTAGTAGCCACATGAAATACAACAGATCTAGCAAGGATATCTCCAGAGTTGTCTCCTA 1796 0.5033 MDVRRRPIDTVRSSSAGEPLKPRKLAHDHLVKAPAADVQALPLAPLYLTNGIFFTLFFSVAYFLLHRWREKIRTSTPLHVVTLSEITAIVSLIASVIYLLGFFGIGFVHPISSRASSDDELELDDDDTLITRDDSRTPGPCPAGVIDCSVISSPPQNQTQNQRVVPASSPKIIDNTPLSLLEEDEEVLKSVVSGSIPSYSLESKLGDCQRAAAIRKEAVQRTTGRSLQGLPLEGFDYESILGQCCEMPIGYVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYLSGGATSIVLRDGMTRAPVVRFATAKRAAQLKFFLEDSLNFESLSGIFNKSSRFARLQSIQCAMAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGLSGNFCSDKKAAAVNWIEGRGKSVICEAIIKEDVVKKVLKTSVEALVELNMLKNLAGSAVAGALGGFNAQAANIVTAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVSMPSVEVGTVGGGTQLASQSACLNLLGVKGASKGSPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVSSHMKYNRSSKDISRVVS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00983 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 364 378 IPR023076 GO:0004420
Bva08g00983 598 Gene3D - 305 421 IPR009023 -
Bva08g00983 598 MobiDBLite consensus disorder prediction 1 20 - -
Bva08g00983 598 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 598 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 184 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Bva08g00983 598 CDD HMG-CoA_reductase_classI 185 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Bva08g00983 598 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 178 577 IPR009029 GO:0015936|GO:0016616
Bva08g00983 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 244 265 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 362 380 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 507 528 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 402 427 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 271 291 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 453 479 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 598 - -
Bva08g00983 598 Gene3D - 180 254 IPR023282 GO:0004420
Bva08g00983 598 Pfam Hydroxymethylglutaryl-coenzyme A reductase 212 588 IPR002202 GO:0004420|GO:0015936
Bva08g00983 598 Gene3D - 255 583 IPR023074 GO:0004420
Bva08g00983 598 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 305 421 IPR009023 -
Bva08g00983 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 519 526 IPR023076 GO:0004420
Bva08g00983 598 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 184 588 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00983 Bva-Chr8 5009818 5013581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00983 1 594 Lipid Metabolism Gene Families AT1G76490 69.371 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00983 K00021 - nnu:104606863 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00983 08 5009818 5013581 Bva11g01456 11 14143799 14147544 BWGD
Bva08g00983 08 5009818 5013581 Bva08g00983 08 5009818 5013581 ECH