Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01026 ATGGTTCGGGTGTCCATTAGCGTAGCAAGTTGCCAAGAAAGGCACAACTTTTCTCAGACCACTGCTTCAGCTCGCCGCCTTCACTCGCAAGTGGTCAAGATGTCGACACCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGATTGCAACAAGATCCTCCTGCTGGTATCAGTGGTGCACCTCAAGACAATAATATCATGCTTTGGAATGCTGTTATCTTTGGGCCTGATGACACCCCATGGGATGGAGGTACGTTCAAGTTGACACTTCAGTTCGCAGAGGATTATCCCAATAAACCACCCACAGTGCGCTTTGTATCTCGAATGTTCCATCCAAACATTTATGCGGATGGAAGCATATGCTTGGACATCCTACAAAATCAGTGGAGCCCTATATATGATGTAGCTGCAATACTTACCTCAATCCAGTCATTGCTCTGTGATCCAAACCCAAACTCGCCAGCAAATTCCGAAGCTGCTCGGATGTTTAGTGAAAACAAGCGCGAATACAACAGAAGAGTACGTGAGATTGTTGAGCAGAGTTGGACTGCTGATTA 557 0.4596 MVRVSISVASCQERHNFSQTTASARRLHSQVVKMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFAEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01026 185 SMART ubc_7 40 183 - -
Bva11g01026 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 37 183 IPR000608 -
Bva11g01026 185 SUPERFAMILY UBC-like 22 183 IPR016135 -
Bva11g01026 185 Pfam Ubiquitin-conjugating enzyme 41 177 IPR000608 -
Bva11g01026 185 CDD UBCc 40 178 IPR000608 -
Bva11g01026 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 110 125 IPR023313 -
Bva11g01026 185 Gene3D Ubiquitin Conjugating Enzyme 3 184 IPR016135 -
Bva11g01026 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 24 185 - -
Bva11g01026 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 24 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01026 Bva-Chr11 11891207 11895442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01026 40 153 Miscellaneous Gene Families AT1G17280 31.092 5.09e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01026 K10573 - egr:104419230 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01453 08 7605893 7610756 Bva11g01026 11 11891207 11895442 BWGD
Bva11g01026 11 11891207 11895442 Bva11g01026 11 11891207 11895442 ECH