Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00607 ATGGTGGATCAATATGCGCTTGCTTGGATTCTAGGTGCTACGCTGAGCCTCGTTGCTCTCTACAATTTGGTTTTCTCCAGGAAGAACCCTGGTGTTTCTTCGGATGCCGTCGCACATTGCACGGAGAACATAACCACCGGTAAAGGAGAATGCAGATCCACTAACCGCAATGGTGAGGTTGATGTTATTATCGTCGGCGCTGGTGTCGCCGGCTCGGCTCTGGCTCACACTCTTGGCAAGGATGGACGACGAGTTCATGTAATTGAAAGAGATCTCAGCGAGCCTGACCGAATAGTTGGGGAGTTACTACAACCTGGGGGATATCTGAAATTAATTGAGCTGGGACTTGAAGATTGCGTGGAGGAAATTGATGCTCAGCCAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAAAATGCTCGACTCTCATATCCCTTGGAGAAGTTCCACTCCAATGTCTCTGGTAGAAGCTTTCACAATGGGCGTTTTATCCAGAGGATGAGGGAGAAGGCTGCCTCTCTTCCAAGTGTACAATTGGAGCAAGGAACAGTCACTTCCCTAATTGAAGAGGAGGGAACAATTACAGGTGTGAACTATAAGAATAAAGATGGCCAAGAATTCGCGTCATTTGCTCCGCTTACTATTGTCTGTGACGGCTGCTTCTCAAACTTGCGGCGTTCCCTTTGTAATCCTAAGgtGGATGTGCCCTCCTCTTTTGTCGGTTTAGTTTTGGAAAATTGTGAACTTCCATATGCAAATCATGGTCATGTTATACTAGCAGATCCCTCGCCAATTTTGTTCTATCCTATAAGTAGTACAGAGGTTCGATGTCTGGTTGATGTGCCTGGTTCGAAAGTTCCTTCTATTTCAAATGGTGAAATGGCGAATTATTTGAAGACTGTGGTGGCTCCACAGATTCCTCCCGAAATTTATGCTGCCTTTGTAGCTGCAGTCGATAAAGGCAACATACGGACCATGCCAAACAGAAGCATGCCAGCGGCTCCTTATCCTACCCCTGGAGCTCTTCTGATGGGAGATGCATTCAACATGCGCCATCCTCTCACCGGGGGAGGAATGACCGTGGCGTTATCTGATATAGTGGTGCTGCGGAATCTTCTGAGGCCTCTGCGTGACTTGAATGATGCGTCCACACTCTCTAAATATCTCGAATCCTTTTATACCTTGCGTAAGCCTGTAGCGGCCACCATAAATACATTGGCAGGAGCCCTTTACAAGGTTTTCTGTGCATCACCGGATCAGGCTAGGAAGGAAATGCGTCAAGCTTGCTTTGATTATCTTAGTCTAGGAGGCGTATTCTCAGAAGGACCAGTCTCTTTACTTTCGGGATTAAACCCTCGGCCGATTAGCTTGGTTCTCCATTTCTTTGCCGTTGCAATATACGGTGTTGGCCGTTTACTGCTACCATTTCCTTCACCTAAACGGATATGGATTGGGGCCAGATTAATCTCTGGTGCTTCAGGAATCATCTTCCCCATAATTAAGGCAGAAGGAGTTCGTCAAATGTTCTTCCCTGCAACAGTTCGAGCTTATTACAGAACTCCTCCGGCTAAATA 1574 0.4676 MVDQYALAWILGATLSLVALYNLVFSRKNPGVSSDAVAHCTENITTGKGECRSTNRNGEVDVIIVGAGVAGSALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEEIDAQPVFGYALFKDGKNARLSYPLEKFHSNVSGRSFHNGRFIQRMREKAASLPSVQLEQGTVTSLIEEEGTITGVNYKNKDGQEFASFAPLTIVCDGCFSNLRRSLCNPKVDVPSSFVGLVLENCELPYANHGHVILADPSPILFYPISSTEVRCLVDVPGSKVPSISNGEMANYLKTVVAPQIPPEIYAAFVAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDASTLSKYLESFYTLRKPVAATINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGVFSEGPVSLLSGLNPRPISLVLHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFPIIKAEGVRQMFFPATVRAYYRTPPAK 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00607 524 PANTHER SQUALENE MONOOXYGENASE 1 523 IPR040125 GO:0004506|GO:0016126
Bva10g00607 524 Gene3D - 52 442 IPR036188 -
Bva10g00607 524 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 523 - -
Bva10g00607 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Bva10g00607 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Bva10g00607 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Bva10g00607 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Bva10g00607 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Bva10g00607 524 SUPERFAMILY FAD/NAD(P)-binding domain 60 434 IPR036188 -
Bva10g00607 524 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00607 Bva-Chr10 5380613 5384640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00607 17 522 Miscellaneous Gene Families AT1G58440 78.346 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00607 K00511 - gmx:100804406 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00607 10 5380613 5384640 Bva06g02190 06 14377676 14381518 BWGD
Bva10g00607 10 5380613 5384640 Bva10g00607 10 5380613 5384640 ECH