Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00438 atggacgaagatcAAATTATGGGATTTGTGACTGCCTtcctgaaaaagaaagggtTTACGCAAACACAACAGGCTTTCCAGGAAGAATTGCAACAGAACAAGAACACTTCCTCGGCTAATTCTCTTGTCGAACCAGACATTGCTAAGCACATCCTCGCCTTGTCCGAATTGGAGAGTGGCCCAGCAAGATATCTTGATGGATATAGCAGACTAAGATCATGGACTTTCAGTTCACTAGATCTGTACAAGCATGAGTTGCTTCGTGTGCTTTATCCAGTATTTATTCATTGCTTTATGGATCTGGTAGCAAAAGCGCATATACAAGAAGCTCGGAACTTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACTTGCGAGACCTTCAAAAGTTGGAAGGTGTTATTTCTCCTTCTCATCTGCAGGAAATGGAATTTGCCCATTCACTTAGGCAGAGCAAATTCAACATAAAGATTTGTGAGTATTCCTATGAACTTCTGTTGCAACATCTGCACAGTACCCAGTCCACCACTATACTCAGCATTATCAATGAGCATATAAACTTTCAAGTTTCTCCTGGACAACCTAGCTCTATTTCTGATGATCCAGAGGCTGTTACACTCACTGGAAGTAGCCAGGATGCTGCAAACCTGATAAACCAAAAGGAAATACGTTGGGGGTTGCTTGAAGACTCTCTAGAAGAACGCCTGGAGAAGGCTGGGGCCTTGCTTTCAGACTCTGAAAAGGCAGAAGGGGAAACCAAAGAGGGAGACAACGATGACAGTAAGAAAAGGTCAATTGAAGGAGGAAAGCAAGGTACTTCAATGAAGAAGGTAAAAAAGGATAAGGCTGGAGGTGCAACAGGGAAAACTGCAAAACATGAGGCTAACACTGTTCCTACTGCTCCGCGAGTTAAACCAGAACTTGCTTTACCTATTAtTCCAATGGAGGTAGAAGAGTCCATTCTTGAAGATTTAAGGAACCGTGTGCAATTGAGTAGTGTTGCACTTCCATCTGTCAGCTTTTACACATTTATCAACACACATAATGGATTAAGTTGTTCGTCAATATCCCATGATGGATCACTGGTCGCTGGAGGATTTTCTGACTCTTCATTGAAgGTTTGGGATATGGCAAAGCTTGGACAACAGCCCACCAGTTGTAATGTGTATGCAACAAGCACTGAGGGGAAAAGTCACCTTAACCTTTTGGGTGAAAATGGCACATCACAAAATGAGCAAATGCTTGGACAAAGTGGGGGAAAAAGACAATATACGTTATATCAAGGTCATTCAGGGCCAGTTCATGCGATCACTTTCAGTCCTGTTGGggattttattctttcctCTTCAGTTGACTCGACAATTCGGTTATGGAGCACAAAGCTTAATGCCAATCTTGTGTGCTACAAGGGTCATAATTACCCTGTCTGGGATGTTCAGTTTAGTCCGGTGGGGCATTATTTTGCCAGCTCTTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCTTTAAGAATAATGGCCGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTATATTGCTACCGGCTCCAGTGACAAAACAGTTCGACTATGGGACGTACAGAGTGGGGAATGTGTCCGCATTTTCATTGGTCACAGGAGtatgattttatctttggcAATGTCTCCTGATGGTCGCTATATGGCATCTGGGGATGAAGATGGCACAATCATGATGTGGGACCTCTCCAGTGGCCGTTGTGTCACACCTTTGATTGGTCACACCTCGTGTGTCTGGTCACTTGCTTTcagTTGCGAAGGTTCGTTAATCGCATCTGGATCTGCTGATTGCACTGTAAAATTATGGGATGTGACTACAAGTACAAAGGTTCCCAGAACTGAAGAAAAAAGTGGAAATGCCAACAGACTCAGATCATTGAAAAGTTTGCCGACCAGATCTACTCCAGTTTACTCATTGCAGTTTTCTCGAAGGAATCTTCTTTTTGCAGCTGGAGCTCTTGCAAAGAGTATTTG 2048 0.4214 MDEDQIMGFVTAFLKKKGFTQTQQAFQEELQQNKNTSSANSLVEPDIAKHILALSELESGPARYLDGYSRLRSWTFSSLDLYKHELLRVLYPVFIHCFMDLVAKAHIQEARNFFNSFREDHEMMHLRDLQKLEGVISPSHLQEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILSIINEHINFQVSPGQPSSISDDPEAVTLTGSSQDAANLINQKEIRWGLLEDSLEERLEKAGALLSDSEKAEGETKEGDNDDSKKRSIEGGKQGTSMKKVKKDKAGGATGKTAKHEANTVPTAPRVKPELALPIIPMEVEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPTSCNVYATSTEGKSHLNLLGENGTSQNEQMLGQSGGKRQYTLYQGHSGPVHAITFSPVGDFILSSSVDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLIGHTSCVWSLAFSCEGSLIASGSADCTVKLWDVTTSTKVPRTEEKSGNANRLRSLKSLPTRSTPVYSLQFSRRNLLFAAGALAKSI 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 460 - -
Bva10g00438 682 ProSitePatterns Trp-Asp (WD) repeats signature. 615 629 IPR019775 -
Bva10g00438 682 Gene3D - 584 682 IPR015943 GO:0005515
Bva10g00438 682 Pfam WD domain, G-beta repeat 424 460 IPR001680 GO:0005515
Bva10g00438 682 Pfam WD domain, G-beta repeat 590 628 IPR001680 GO:0005515
Bva10g00438 682 Pfam WD domain, G-beta repeat 467 502 IPR001680 GO:0005515
Bva10g00438 682 Pfam WD domain, G-beta repeat 507 544 IPR001680 GO:0005515
Bva10g00438 682 Pfam WD domain, G-beta repeat 347 377 IPR001680 GO:0005515
Bva10g00438 682 Pfam WD domain, G-beta repeat 548 586 IPR001680 GO:0005515
Bva10g00438 682 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Bva10g00438 682 CDD TAF5_NTD2 61 193 IPR007582 -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 460 IPR001680 GO:0005515
Bva10g00438 682 MobiDBLite consensus disorder prediction 242 297 - -
Bva10g00438 682 CDD WD40 428 682 - -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 553 IPR001680 GO:0005515
Bva10g00438 682 Pfam WD40 associated region in TFIID subunit, NTD2 domain 59 187 IPR007582 -
Bva10g00438 682 PRINTS G protein beta WD-40 repeat signature 447 461 IPR020472 -
Bva10g00438 682 PRINTS G protein beta WD-40 repeat signature 531 545 IPR020472 -
Bva10g00438 682 PRINTS G protein beta WD-40 repeat signature 615 629 IPR020472 -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 637 IPR001680 GO:0005515
Bva10g00438 682 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 34 IPR006594 GO:0005515
Bva10g00438 682 SUPERFAMILY Taf5 N-terminal domain-like 50 192 IPR037264 -
Bva10g00438 682 Gene3D TFIID subunit TAF5, NTD2 domain 42 192 IPR037264 -
Bva10g00438 682 PANTHER CANNONBALL-RELATED 1 682 - -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 549 - -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 596 631 - -
Bva10g00438 682 SUPERFAMILY WD40 repeat-like 339 679 IPR036322 GO:0005515
Bva10g00438 682 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 682 IPR037783 -
Bva10g00438 682 SMART WD40_4 463 502 IPR001680 GO:0005515
Bva10g00438 682 SMART WD40_4 589 628 IPR001680 GO:0005515
Bva10g00438 682 SMART WD40_4 505 544 IPR001680 GO:0005515
Bva10g00438 682 SMART WD40_4 420 460 IPR001680 GO:0005515
Bva10g00438 682 SMART WD40_4 547 586 IPR001680 GO:0005515
Bva10g00438 682 SMART WD40_4 338 377 IPR001680 GO:0005515
Bva10g00438 682 ProSitePatterns Trp-Asp (WD) repeats signature. 531 545 IPR019775 -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 554 591 - -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 511 IPR001680 GO:0005515
Bva10g00438 682 MobiDBLite consensus disorder prediction 242 289 - -
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 595 IPR001680 GO:0005515
Bva10g00438 682 ProSitePatterns Trp-Asp (WD) repeats signature. 573 587 IPR019775 -
Bva10g00438 682 Gene3D - 507 583 IPR015943 GO:0005515
Bva10g00438 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 504 - -
Bva10g00438 682 Gene3D - 244 506 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00438 Bva-Chr10 4555081 4561950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00438 489 682 Miscellaneous Gene Families AT5G08390 28.866 1.22e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00438 K03130 - gmx:100805953 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00438 10 4555081 4561950 Bva06g02337 06 15097584 15104299 BWGD