Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02337 atggacgaagatcAAATTATGGGATTTGTGACGGCGTTCCTGAAGAAGAAAGGTTTTACGCAAACACAGCAGGCTCTTCAAGAAGAACTGCAACAGAATAAGAACACTTCCTCTGCTGATTCTCTTGTCGAACCAGACATTGCCAAGCACATCCTCGCTTTCTCCgaATTGGAGAGTGGTCCTGCAAGATATCATGGTGGATATGGCAGACTAAGATCATGGACTTATAGTTCACTAGATCTGTACAAGCATGAATTGCTTCGTGTGCTCTATCCGGTATTTATTCATTGCTTTATGGATCTGGTGGCCAAAGGGCATATACAAGAAGCTCGGAACTTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACTTGCGAGACCTTCAAAAGTTGGAAGGAGTTATTTCTCCTTCTCACCTGCAGGAAATGGAATTTGCCCATTCCCTTCGGCAGAGCAAATTCAACATAAAAATGTGTGAGTATTCCTACGAGCTTCTGTTGCAACATCTGCATAGTACTCAGTCCACCACTGTACTCGGCATTATCAATGAGCATATTAACTTCCAAGTTTCTCCTGGACAGCCTAGCTCTATTTCTGATGATCCAGAGGCTGTTACACTCACTGGAAGCAGCCAGGATGCTGCAAACCAGATAAACCATAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTTGAAGGACGCCTGGAGAAGGCTGCAGCCTTGCTTTCAGACTCTGAAAAAGCTGAAGGTGAAACCAAAGAGGGAGAGAACGATGACAGTAAGAAAAGGTCTATTGAAGGGGGAAAGCAAGGTTCTTCAATGAAGAAGGTAAAAAAGGATAAAGCTGGAGGTGCAACAGGCAAAACTGCAAAACCTGAGGCTAACACTGTTTCTACTGCACCACGAGTTAAACCAGAACTTGCTTTACCCACAATTCCAACAGAGGTAGAACAGTCCATCCTTGAAGATTTAAGGAACCGTGTGCAATTGAGTAGTGTAGCATTACCATCTGTCAGCTTTTACACATTTATCAATACACATAATAGTTTAAGCTGTTCGTCAATATCTCATGATGGATCACTGGTCGCTGGAGGATTTTCTGACTCTTCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGCTCACCAGTTCTCCTTCGCAAGTTGAAAATGGCACATCACAAAATGACCAAATGCTTGGGCAAAGTGGGGGGAAAAGACAATATACGCTCTATCAAGGTCATTCAGGGCCAGTTCATGGAGTCACTTTCAGTCCTTTTGgagattttattctttcctCTTCAGCAGACTCGACAATTCGGTTATGGAGCACAAAGCTTAATGCCAATCTTGTGTGCTACAAGGGGCATAATTACCCTGTTTGGGATGTTCAGTTTAGTCCGGTGGGGCATTATTTTGCCAGCTCTTCACATGACAGAACTGCTAGGATTTGGTCTATGGACCGGATACAGCCTTTAAGAATAATGGCAGGACACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCTACCGGCTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGGGAGTGTGTCCGCATTTTCATTGGTCACAGGAGTATGATTTTATCTCTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCCAGTGGCCGCTGTGTCACACCTTTGATTGGTCACTCATCGTGTGTCTGGACACTTGCTTTTAGTTGCGAAGGTTCTCTCCTTGCATCTGGATCAGCTGATTGCACTGTAAAATTATGGGATGTGACTACAAGTACAAAGGTTCCCAGAACTGAAGAAAAAAGTGGAAATGCCAACAGACTGAGATCACTGAAAACTTTACCGACCAAATCTACTCCTGTGCACTCTTTGCGGTTTTCTCGAAGGAACCTCCTTTTTGCCGCTGGAGCTCTTGCTAAGAGTATTTG 2009 0.436 MDEDQIMGFVTAFLKKKGFTQTQQALQEELQQNKNTSSADSLVEPDIAKHILAFSELESGPARYHGGYGRLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNSFREDHEMMHLRDLQKLEGVISPSHLQEMEFAHSLRQSKFNIKMCEYSYELLLQHLHSTQSTTVLGIINEHINFQVSPGQPSSISDDPEAVTLTGSSQDAANQINHKEIHWGLLEDSLEGRLEKAAALLSDSEKAEGETKEGENDDSKKRSIEGGKQGSSMKKVKKDKAGGATGKTAKPEANTVSTAPRVKPELALPTIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNSLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQLTSSPSQVENGTSQNDQMLGQSGGKRQYTLYQGHSGPVHGVTFSPFGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLIGHSSCVWTLAFSCEGSLLASGSADCTVKLWDVTTSTKVPRTEEKSGNANRLRSLKTLPTKSTPVHSLRFSRRNLLFAAGALAKSI 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 378 IPR001680 GO:0005515
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 447 - -
Bva06g02337 669 SMART WD40_4 534 573 IPR001680 GO:0005515
Bva06g02337 669 SMART WD40_4 450 489 IPR001680 GO:0005515
Bva06g02337 669 SMART WD40_4 407 447 IPR001680 GO:0005515
Bva06g02337 669 SMART WD40_4 576 615 IPR001680 GO:0005515
Bva06g02337 669 SMART WD40_4 338 377 IPR001680 GO:0005515
Bva06g02337 669 SMART WD40_4 492 531 IPR001680 GO:0005515
Bva06g02337 669 Pfam WD domain, G-beta repeat 494 531 IPR001680 GO:0005515
Bva06g02337 669 Pfam WD domain, G-beta repeat 535 573 IPR001680 GO:0005515
Bva06g02337 669 Pfam WD domain, G-beta repeat 347 377 IPR001680 GO:0005515
Bva06g02337 669 Pfam WD domain, G-beta repeat 577 615 IPR001680 GO:0005515
Bva06g02337 669 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Bva06g02337 669 Pfam WD domain, G-beta repeat 454 489 IPR001680 GO:0005515
Bva06g02337 669 CDD WD40 346 669 - -
Bva06g02337 669 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 498 IPR001680 GO:0005515
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 582 IPR001680 GO:0005515
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 457 491 - -
Bva06g02337 669 CDD TAF5_NTD2 61 193 IPR007582 -
Bva06g02337 669 Gene3D - 495 578 IPR015943 GO:0005515
Bva06g02337 669 MobiDBLite consensus disorder prediction 244 288 - -
Bva06g02337 669 ProSitePatterns Trp-Asp (WD) repeats signature. 602 616 IPR019775 -
Bva06g02337 669 PANTHER CANNONBALL-RELATED 1 669 - -
Bva06g02337 669 Pfam WD40 associated region in TFIID subunit, NTD2 domain 59 187 IPR007582 -
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Bva06g02337 669 Gene3D - 236 494 IPR015943 GO:0005515
Bva06g02337 669 MobiDBLite consensus disorder prediction 244 304 - -
Bva06g02337 669 SUPERFAMILY WD40 repeat-like 339 666 IPR036322 GO:0005515
Bva06g02337 669 SUPERFAMILY Taf5 N-terminal domain-like 50 192 IPR037264 -
Bva06g02337 669 Gene3D TFIID subunit TAF5, NTD2 domain 43 192 IPR037264 -
Bva06g02337 669 Gene3D - 579 669 IPR015943 GO:0005515
Bva06g02337 669 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Bva06g02337 669 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Bva06g02337 669 PRINTS G protein beta WD-40 repeat signature 602 616 IPR020472 -
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 578 - -
Bva06g02337 669 ProSitePatterns Trp-Asp (WD) repeats signature. 560 574 IPR019775 -
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 618 - -
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 624 IPR001680 GO:0005515
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 536 - -
Bva06g02337 669 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 669 IPR037783 -
Bva06g02337 669 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Bva06g02337 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 447 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02337 Bva-Chr6 15097584 15104299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02337 476 669 Miscellaneous Gene Families AT5G08390 27.835 7.68e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02337 K03130 - gmx:100781563 1139.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00438 10 4555081 4561950 Bva06g02337 06 15097584 15104299 BWGD