Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00356 ATGAGCAGGCCAGGAGATTGGAACTGCAGGTCGTGCAACCATCTCAACTTTCAGAGAAGAGAATCGTGCCAAAGATGTATGGAGCCAAGGCCTGGCGGTGGCACTGAGTATGGATCATCATCATCGGGTTTTGGTGGGAGAGGCGGCTCTTCATTTGCCTTCACGACTGGCCCCGATGTCCGGCCCGGTGACTGGTACTGCACTGTCGCCAATTGTGGAGCCCACAACTTCTCCAGCCGTTCCAGCTGCTTCAAGTGCGCCTCCCCCAAGGAAGACTCTTCTTCTTCCGACATAGCCCGAATCAGAGGCTTTGGTTTCCCCGCCACCCGCCCCGGCTGGAAAAATGGTGACTGGATATGCACCAGGTCTGGATGTAACGAGCATAACTTCGCCAATAGAATGGAATGCTACCGATGCAATGCACCAAGGGACTCTACTAGTACCAGGTCCCCATATTCATCCTA 464 0.5431 MSRPGDWNCRSCNHLNFQRRESCQRCMEPRPGGGTEYGSSSSGFGGRGGSSFAFTTGPDVRPGDWYCTVANCGAHNFSSRSSCFKCASPKEDSSSSDIARIRGFGFPATRPGWKNGDWICTRSGCNEHNFANRMECYRCNAPRDSTSTRSPYSS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00356 154 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Bva10g00356 154 ProSitePatterns Zinc finger RanBP2-type signature. 65 86 IPR001876 -
Bva10g00356 154 PANTHER OS02G0203700 PROTEIN 1 146 - -
Bva10g00356 154 ProSiteProfiles Zinc finger RanBP2 type profile. 114 145 IPR001876 -
Bva10g00356 154 SMART zf_4 5 29 IPR001876 -
Bva10g00356 154 SMART zf_4 63 89 IPR001876 -
Bva10g00356 154 SMART zf_4 116 142 IPR001876 -
Bva10g00356 154 ProSitePatterns Zinc finger RanBP2-type signature. 118 139 IPR001876 -
Bva10g00356 154 ProSiteProfiles Zinc finger RanBP2 type profile. 61 92 IPR001876 -
Bva10g00356 154 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Bva10g00356 154 Gene3D - 2 33 - -
Bva10g00356 154 Gene3D - 109 146 - -
Bva10g00356 154 Gene3D - 56 93 - -
Bva10g00356 154 PANTHER ZINC FINGER PROTEIN 1 146 - -
Bva10g00356 154 Pfam Zn-finger in Ran binding protein and others 114 143 IPR001876 -
Bva10g00356 154 Pfam Zn-finger in Ran binding protein and others 61 92 IPR001876 -
Bva10g00356 154 Pfam Zn-finger in Ran binding protein and others 3 31 IPR001876 -
Bva10g00356 154 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Bva10g00356 154 SUPERFAMILY Ran binding protein zinc finger-like 108 146 IPR036443 -
Bva10g00356 154 SUPERFAMILY Ran binding protein zinc finger-like 57 93 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00356 Bva-Chr10 4144592 4145248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00356 - - gmx:100811107 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00356 10 4144592 4145248 Bva10g00356 10 4144592 4145248 ECH
Bva06g01018 06 8390738 8391912 Bva10g00356 10 4144592 4145248 ECH
Bva05g00674 05 3363631 3364760 Bva10g00356 10 4144592 4145248 ECH