Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00243 ATGTCTTCATCATATCTTCCTGCAACAACAGAGTCACTTGCCCAGGCATTGGAAGCCAAGGATCCATCTGAGGCAATCTCGATTCTTTATCGTGTACTTGACaatccttcttcttctccagaAGCTCTCCGCATAAAAGAGCAAGCCATCACAAACCTGTCTGACCTTCTCAGGCAGGAGAATAGGGCGGAGGATCTACGCAGCCTTCTGACTCAATTGAGgcccttcttttctttgatcCCTAAGGCAAAGACTGCTAAAATTGTGAGGGGAATTATTGACTCTGTTGCTAAAGTACCAGGGACGTCTGATCTACAAATTGCTCTTTGTAAAGAAATGGTGCAGTGGACTCGTGCTGAAAAGCGTACCTTTCTGAGGCAGCGAGTTGAAGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAGGAGTATGCAGAAGCTTTGACTCTCCTTACAGGGTTAGTCAAAGAGGTTAGAAGGTTAGATGATAAACTTCTTCTTGTAGACATAGACTTGCTTGAAAGTAAGCTACATTTCTCCTTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCCCCGGCCCAACAAGGGGCCATAGATCTGCAGAGTGGGATTCTTCACGCAGAGGAAAAGGATTACAAAACTgcatatagttatttttttgaagCATTTGAGTCTTTCAATGCTCTTGAAGACCCCAAGGCTGTTTTTAGCCTGAAGTATATGTTGTTGTGTAAGATCATGGTTAGTCAAGCTGATGATGTGGCTGGGATTATTTCTTCTAAAGCTGGGCTGCAATATGTTGGGCCTGATTTGGATGCCATGAAAGCTGTTGCAGATGCTCATTCAAAGCGATCTCTCAGGTTATTTGAGACTGCATTGCGGGACTACAAAGCACAGTTGGAGGAAGACCCAATTGTACACAGGCATCTCTCGTCCCTGTACGATACCCTCCTGGAGCAGAATCTTTGCAGATTGATTGAGCCGTTCTCAAGGGTTGAGATTGGCCATATTGCGGAGTTAATTGAACTTCCCGTTGATCATGTGGAGCGGAAGCTGTCTCAGATGATTTTGGACAAGAAGTTTGCCGGGACATTGGATCAAGGTGCGGGATGCCTCGTCATATTTGACGATCCTAAGACCGACGCAATCTACCCTGCTACTTTAGAGACGATTTCCAATATTGGCAAGGTCGTCGACAGTCTTTATGTTAGGTCAGCCAAGATAATGGCATG 1268 0.4353 MSSSYLPATTESLAQALEAKDPSEAISILYRVLDNPSSSPEALRIKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKVPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYAEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLRLFETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIGHIAELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00243 422 Gene3D - 46 421 - -
Bva10g00243 422 Pfam PCI domain 285 386 IPR000717 -
Bva10g00243 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Bva10g00243 422 PANTHER - 2 422 - -
Bva10g00243 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Bva10g00243 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 422 - -
Bva10g00243 422 SUPERFAMILY TPR-like 129 323 IPR011990 GO:0005515
Bva10g00243 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Bva10g00243 422 Coils Coil 46 66 - -
Bva10g00243 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Bva10g00243 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Bva10g00243 422 SMART PINT_4 320 403 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00243 Bva-Chr10 3542961 3546163 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00243 K03036 - twl:119993222 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02512 06 15924112 15928352 Bva10g00243 10 3542961 3546163 BWGD