Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02512 ATGGCCACTTCAAAGTCTACAGAATACTGGGAATGGAGTTGCCCAAACACAAATTGTGGAACTCTGCGTTTTAAGACCGACTCACTGTGTTCCTACCTGAATCTGAATTGGGTTACAAGTACAAGCAAGCTGAAAATTCCCTCAGATCAATCGGGATTTTTCTCAACTCTACCGGATCGGGCTTTCTTCGTCGCGCATCGGAGACTTCGCCCGTCGCTTCATTTTGCTTATTTGCAGTTCGTcgcttcttttctctctttgttcgTTCGGGAGTTTGTCCAAGCAATCGTCATGTCTTTGTCATATCTTCCTGCGACAACAGAGTCACTTGCTCAGGCACTGGAAGCCAAAGATCCGTCTGAGGCCATCTCAATTCTCTATCGTGTACTCGACAacccttcttcttctccagaAGCTCTGCGCATAAAAGAGCAAGCCATCACAAACCTCTCTGACCTTCTTAGGCAGGAGAATAGGGCAGAGGATCTGCGCAGCCTTCTTACCCAATTGAGgcccttcttttctttgatcCCTAAGGCAAAGACTGCTAAAATTGTAAGGGGAATAATTGACTCTGTTGCTAAAATACCAGGGACGTCTGATCTACAGATTGCTCTCTGCAAAGAAATGGTGCAATGGACTCGTGCTGAAAAGCGTACCTTTCTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTGACTCTCCTTACGGGGTTAGTCAAAGAGGTTAGAAGGCTGGACGATAAGCTTCTTCTTGTAGACATAGACTTGCTTGAAAGTAAGCTACACTTCTCCTTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACAGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCCCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGGATTCTTCACGCGGAGGAAAAGGATTATAAAACTGCATATAGTTACTTTTTTGAAGCATTTGAGTCTTTCAATGCTCTTGAAGACCCCAAGGCTGTTTATAGCCTAAAGTATATGTTGTTGTGCAAGATCATGGTTAGTCAAGCTGATGATGTGGCTGGGATTATTTCTTCTAAAGCTGGCCTGCAATATGTTGGGCCTGATTTGGATGCCATGAAAGCTGTTGCCGATGCTTATTCTAAGCGATCTCTCAGGTTATTTGAGACTGCATTGCGGGACTACAAAGCACAGTTGGAGGAAGACCCAATTGTACACAGACACCTCTCGTCCCTGTATGATACCCTCCTCGAGCAGAATCTTTGCAGATTGATTGAGCCATTCTCAAGGGTTGAGATTGCACATATTGCTGAGTTAATTGAACTTCCCACTGATCATGTGGAGCGTAAGCTATCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTCGTCATATTTGACGATCCCAAGACTGACGCAATCTACCCTGCAACTTTAGAGACCATTTCCAATATTGGGAAGGTCGTCGACAGTCTTTATGTTAGGTCAGCCAAGATAATGGCATG 1559 0.4349 MATSKSTEYWEWSCPNTNCGTLRFKTDSLCSYLNLNWVTSTSKLKIPSDQSGFFSTLPDRAFFVAHRRLRPSLHFAYLQFVASFLSLFVREFVQAIVMSLSYLPATTESLAQALEAKDPSEAISILYRVLDNPSSSPEALRIKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYSEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVYSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAYSKRSLRLFETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPTDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02512 519 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 490 515 IPR040780 -
Bva06g02512 519 SUPERFAMILY "Winged helix" DNA-binding domain 411 493 IPR036390 -
Bva06g02512 519 SUPERFAMILY TPR-like 226 420 IPR011990 GO:0005515
Bva06g02512 519 Coils Coil 223 243 - -
Bva06g02512 519 Coils Coil 143 163 - -
Bva06g02512 519 ProSiteProfiles PCI domain profile. 320 488 IPR000717 -
Bva06g02512 519 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 111 225 IPR040773 -
Bva06g02512 519 Gene3D - 143 518 - -
Bva06g02512 519 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 417 500 - -
Bva06g02512 519 Pfam PCI domain 382 483 IPR000717 -
Bva06g02512 519 PANTHER - 100 519 - -
Bva06g02512 519 SMART PINT_4 417 500 IPR000717 -
Bva06g02512 519 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 100 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02512 Bva-Chr6 15924112 15928352 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02512 K03036 - pop:7457878 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02512 06 15924112 15928352 Bva10g00243 10 3542961 3546163 BWGD