Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00212 ATGGCGACGCCGTTGTTGGACGAAGAAACCGCGAAGAAAGTGCTACGACAAGTTGAGTTCTACTTCAGTGATAGCAACCTTCCTAGGGACAATTTTCTGAAGAAAACTATCAGTGAAAGCGATGATGGCATGGTTAGTTTGGCTTTGATTTGTTCATTTACTCGGATGAGAAATCATCTTAATCTGGGGAATGCGAAGCCAGATGAGGTGACTGAAGATACTGTTAAAGCTGTTGCTGAAACTTTGAGAAAATCAGATTTACTCAAGATCTCTGAAGATGGAAAAAAAGTTGGGAGGACCAGTGAACTTTCAAAGCTGGACGAGATAATTGAGCAGGTAGATGTGAGAACAATTGCTGCTTCACCATTTGAATACGATGTGAAGCGTGAAGACTTGGAGACATTCTTTGGGCAATATGCCAAGgttaATAGTGTAAGGATGCCCCGTCATGTTGGAGACAAAAGATTCTTCTGTGGCACTGCGCTGGTTGAGTTTTCATCAGAGGAAGATACTGAAAAGGTTTTGAAGCAAAGACTAGAGTATGCAGGGGTTGAGTTAGAATTAAAACCCAAGAAGGATTTTGATGCCGAGAGAGCCAATGAATTAGAAGAGTATGAAAAATCTGGTTCAGTCTTGAGTTCAAATCACCATGATAACTCAAATGGAGAAGCAAGCTATCCTAGGGGCTTAATTATTGCCTTCAAACTCAAGTGCATGTCTGATGGAGTTCCGGCAGAAAAAGATGGCACCTGTCAGcataatgatataaatagtGTCTCTAAAACAGATGAACAAAAGCCCTTAGAAGATGCTGctgaagaaaatgaacaaaaggTTTCAGAAAATATTGACAAAGGCGAAGAAAACCATGGGAAGGgcgaagaaaaagaaactgaagTTGAAGAAAAGACTCAGGAAAcagatgaaaaattttcagcTGCTTCTTGCAAGGATAACATGGATGTTGTCATGCGTGAGGATTTAAAGGGTGTCTTTGAAAAGTTCGGTACTGTTAAGTACATCGATTTCAAGATTGGAGTTGATTCAGGATACATCCGGTTTGAAGAACCTGATGCTGGTCAGAAAGCTCGTGCCGCTGCAGTTCTTTCAGAAAAGGGTGGTTTggttgttaaaaattatattgctACTCTAGATCCAGTGACTGGTGAGGCTGAAAGGGAATACTGGAGTGCTATCCGTGGTAATCAAGAAAAGCACCGAGAAAACAAGAGTAGCCGAGGAAGGGGAGGAAGGTTCGGTAGAGGAGGAAAACATGGCCGTTCCAGGGAGAATGACTCAGCAACAGGTCGCCCAAATAAAGCTCAGAAGACTGGAGCAGCATA 1343 0.3969 MATPLLDEETAKKVLRQVEFYFSDSNLPRDNFLKKTISESDDGMVSLALICSFTRMRNHLNLGNAKPDEVTEDTVKAVAETLRKSDLLKISEDGKKVGRTSELSKLDEIIEQVDVRTIAASPFEYDVKREDLETFFGQYAKVNSVRMPRHVGDKRFFCGTALVEFSSEEDTEKVLKQRLEYAGVELELKPKKDFDAERANELEEYEKSGSVLSSNHHDNSNGEASYPRGLIIAFKLKCMSDGVPAEKDGTCQHNDINSVSKTDEQKPLEDAAEENEQKVSENIDKGEENHGKGEEKETEVEEKTQETDEKFSAASCKDNMDVVMREDLKGVFEKFGTVKYIDFKIGVDSGYIRFEEPDAGQKARAAAVLSEKGGLVVKNYIATLDPVTGEAEREYWSAIRGNQEKHRENKSSRGRGGRFGRGGKHGRSRENDSATGRPNKAQKTGAA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00212 447 Pfam La domain 14 84 IPR006630 -
Bva10g00212 447 Gene3D - 107 199 IPR012677 -
Bva10g00212 447 MobiDBLite consensus disorder prediction 207 222 - -
Bva10g00212 447 MobiDBLite consensus disorder prediction 247 311 - -
Bva10g00212 447 CDD LA_like_plant 10 99 - -
Bva10g00212 447 SUPERFAMILY RNA-binding domain, RBD 325 407 IPR035979 GO:0003676
Bva10g00212 447 Gene3D - 6 106 IPR036388 -
Bva10g00212 447 Pfam RNA binding motif 323 415 IPR014886 GO:0003723
Bva10g00212 447 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva10g00212 447 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva10g00212 447 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva10g00212 447 CDD RRM2_La_like 321 384 - -
Bva10g00212 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Bva10g00212 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Bva10g00212 447 MobiDBLite consensus disorder prediction 399 415 - -
Bva10g00212 447 PANTHER OS02G0610400 PROTEIN 3 447 - -
Bva10g00212 447 MobiDBLite consensus disorder prediction 259 311 - -
Bva10g00212 447 MobiDBLite consensus disorder prediction 205 224 - -
Bva10g00212 447 Gene3D - 293 415 IPR012677 -
Bva10g00212 447 ProSiteProfiles xRRM domain profile. 302 432 IPR014886 GO:0003723
Bva10g00212 447 SMART la 8 100 IPR006630 -
Bva10g00212 447 SUPERFAMILY "Winged helix" DNA-binding domain 5 102 IPR036390 -
Bva10g00212 447 SUPERFAMILY RNA-binding domain, RBD 109 193 IPR035979 GO:0003676
Bva10g00212 447 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Bva10g00212 447 SMART rrm1_1 117 189 IPR000504 GO:0003723
Bva10g00212 447 Coils Coil 269 289 - -
Bva10g00212 447 MobiDBLite consensus disorder prediction 399 447 - -
Bva10g00212 447 PANTHER LUPUS LA PROTEIN-RELATED 3 447 IPR045180 -
Bva10g00212 447 CDD RRM1_La 117 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00212 Bva-Chr10 3373053 3376931 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00212 K11090 - jre:108984308 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00212 10 3373053 3376931 Bva06g02531 06 16031282 16035192 BWGD
Bva10g00212 10 3373053 3376931 Bva10g00212 10 3373053 3376931 ECH