Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02531 ATGGCGGCAGCGTCGCTGGGCGAAGAAACCGCGAAGAAAGTGATACGACAGATTGAGTTCTACTTCAGTGATAGCAACCTTCCTAGGGACAATTTTCTGAAGAAATGTATCACGGAAAGCGATGATGGCATGATTAGTTTGGCTTTGATTTGTTCGTTTACGCGGATGCGAAATCATCTTAATCTGGGCAATGTAAAGCCAGATGAAGTGACTGAAGATACTGTTAAAGCTGTTTCTGAAACTCTTAGAAAATCGGATTCACTCAAGGTCTCTGAAGATGGGAAAAAAGTTGGCAGGACTATGGAACTATCAAAGCTGGACGAGGTTATTGAGCAGGTAGATGTGAAAACAATTGCTGCTTCACCATTTGAATATACTGTGAAGCGTGAAGACCTGGAGACATTCTTTGGTCAATATGCCAAGgtTAATAGTGTCAGGATGCCCCGTCATGTTGGAGACAAAAGATTCTTCTGTGGCACTGCCCTGGTTGAGTTTTCATCAGAGGAAGATACTGAGAAGGTTATGAAGCAAATGTTAGAGTATGCAGGGGTTAAGTTAGAATTAAAACCCAAGAAGGATTTCGATGCAGAGAGAGCCAACGAGTTAGAAGagcatgaaaatttttgttcgTTCATGAGTTCAAATCACCGTAATAACTCAAATGGGGAAGCAAGCTATCCTAAGGGCTTAATTATTGCCTTGAAACTCAAGAGCATGTCTGATGGAGTTCCAGTGGAAAAAGATGGTATCTGTCAACTTGCCAATAACGATAATAGTGTCTCCAAAAAAGATGAACAAAAGCCATTAAAAGATGCTGctgaagaaaatgaacaaaatgtGTCAGAAAATATTGACGATGATAAAGAAAACCATGGGGAGAGTGTAGGAAAAGGCACtgaagttgaagaaaaaacTCAGGAAACAGATGAAAAAATTTCAGCCGCTTCTTACAAGGATAACATGGATGTTGTTATGCGTGAGGATTTAAAGGGTGTCTTTGAAAAGTTTGGTACTGTCAAGTACATCGATTTCAAGATTGGAGCTGATTCAGGATACATCCGGTTTGAAGAATCTGATGCTGGTCAGAAAGCTCGCGCTGCTGCAGTTCTTTCTGAAAAGGGTGGTTTggttgttaaaaattatattgctACTCTAGATCCGGTGACTGGTGAGGCAGAAAGGGAATACTGGAGTGCTATCCGTGGCAATCAAGAAAAACACCGAGAAAACAAGAGTAGCCGAGGAAGGGGAGGAAGGTTTGGTAGAGGAGGAAAACATGCCCGTTCTAGGGAGAATTACTCAGCAAGAGATCGCCCAAATAAAGTTCAGAGAATTGTAGCTGCGTA 1346 0.3975 MAAASLGEETAKKVIRQIEFYFSDSNLPRDNFLKKCITESDDGMISLALICSFTRMRNHLNLGNVKPDEVTEDTVKAVSETLRKSDSLKVSEDGKKVGRTMELSKLDEVIEQVDVKTIAASPFEYTVKREDLETFFGQYAKVNSVRMPRHVGDKRFFCGTALVEFSSEEDTEKVMKQMLEYAGVKLELKPKKDFDAERANELEEHENFCSFMSSNHRNNSNGEASYPKGLIIALKLKSMSDGVPVEKDGICQLANNDNSVSKKDEQKPLKDAAEENEQNVSENIDDDKENHGESVGKGTEVEEKTQETDEKISAASYKDNMDVVMREDLKGVFEKFGTVKYIDFKIGADSGYIRFEESDAGQKARAAAVLSEKGGLVVKNYIATLDPVTGEAEREYWSAIRGNQEKHRENKSSRGRGGRFGRGGKHARSRENYSARDRPNKVQRIVAA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02531 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Bva06g02531 448 Gene3D - 6 107 IPR036388 -
Bva06g02531 448 PANTHER OS02G0610400 PROTEIN 5 447 - -
Bva06g02531 448 SUPERFAMILY "Winged helix" DNA-binding domain 8 102 IPR036390 -
Bva06g02531 448 PANTHER LUPUS LA PROTEIN-RELATED 5 447 IPR045180 -
Bva06g02531 448 CDD LA_like_plant 10 99 - -
Bva06g02531 448 CDD RRM2_La_like 322 385 - -
Bva06g02531 448 MobiDBLite consensus disorder prediction 402 416 - -
Bva06g02531 448 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva06g02531 448 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva06g02531 448 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva06g02531 448 SUPERFAMILY RNA-binding domain, RBD 109 193 IPR035979 GO:0003676
Bva06g02531 448 SUPERFAMILY RNA-binding domain, RBD 326 408 IPR035979 GO:0003676
Bva06g02531 448 Gene3D - 109 207 IPR012677 -
Bva06g02531 448 Gene3D - 296 416 IPR012677 -
Bva06g02531 448 SMART rrm1_1 117 189 IPR000504 GO:0003723
Bva06g02531 448 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Bva06g02531 448 MobiDBLite consensus disorder prediction 424 438 - -
Bva06g02531 448 SMART la 8 100 IPR006630 -
Bva06g02531 448 Coils Coil 270 290 - -
Bva06g02531 448 MobiDBLite consensus disorder prediction 260 312 - -
Bva06g02531 448 ProSiteProfiles xRRM domain profile. 306 430 IPR014886 GO:0003723
Bva06g02531 448 MobiDBLite consensus disorder prediction 402 448 - -
Bva06g02531 448 Pfam RNA binding motif 324 416 IPR014886 GO:0003723
Bva06g02531 448 MobiDBLite consensus disorder prediction 256 312 - -
Bva06g02531 448 Pfam La domain 14 83 IPR006630 -
Bva06g02531 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02531 Bva-Chr6 16031282 16035192 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02531 K11090 - gmx:100786016 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00212 10 3373053 3376931 Bva06g02531 06 16031282 16035192 BWGD
Bva06g02531 06 16031282 16035192 Bva06g02531 06 16031282 16035192 ECH