Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00906 ATGACCATGTCAAAAACAGCATCCTtcattcttgttctttttgcaGCTGCTGCAGTTGAAGTTCAAGGCCGGTTTCTGCGAGACATTTCTGGTTCTGAGCTAGTTTCTGATGGAGTTGATGATGCCAAACCTGACAAAAACAACTACTTGCTTCTCAAAGGGATTGAATTCGAATCATCTGAGAAGGAGTGTAAGCAAATGTATGGGTTCTTACCATGTTCAAGCAGCATTTTCGGCCATCTCTTCCTGATTCTGGTTTATGAGTATCTGTTGTTCTATGGAGAATCATTTTTGGCTTCTGGAGGAGAACAGATATTCAAGATTCTTGGCCCGGGTATATTTGGTGCCAGTGCCTTTGATCTACTTGGTGCCCTTCCGGAGTCCCTAATTCTTCTTGTCTCTGGACTTCTTAGCACTAATAAGGAGACTGCACAAGACTATGCCTACACAGGAGTGGGCTTATTGGCTGGATCTTCCATCTTGCTTCTGACAGTAGTTTGGGGAACCTGTGTTATCGCTGGCAGCAAAAAATATGAGActcattcaaattttacaGTCACTGATGTTGCTGATTCAGCATATACAAGACTAAAATCATTCTTGACTGGTTCTGGCATTACAACTGATCTGGAGACCAGCTACATTGCAAGAATCATGGTTTTCTCAATTACACCACTTCTGATCATGCAAATCCCCAGTTTCTTCCACTTCTCTTTTGGGCTAAGAAGCGCTATCTTGATCGTTGCCTTAATCATTACTGTCATTTTTCTGTTCCTCTATTTCATTTACCAGGTATTTCAGCCTTGGATACAGAAAAGAAGACTAGAGTTTGTGAAACATGATCATGTGATATTGAAGATCATAGAACATGTTCAAAAGCACACCCTGCAAAGGATCCTCACCAAGAATGGGACTCCAAATGTGAGGGCCATCAGAAGGATATTTAGGGAAATAAACCAAGATGGTGACAGTGGTATAACAGCTTCTGAAGTGAAAAGGTTGCTGTTTGAGAACAGATTAAATGAAATAGATGCcactgaagaaaaagaaatacaaaaaattttagaaatttttgacATGAATGATgacaagaagataaataagGAAGAATTTGTTTATGGCTTCACAAAATGGCTGGAGCAAACGAAGTATGCTGTGAAGAAGGAGTATCTCAGACGCGATTCGCTGAAGAAAGTATATAAGGCTTTTGAGCCATGGatacaaaacaaaaggaaagaacgTGAAAATCAGCAACATCTCATATCTGAAATATTAAGCTATGTTCAGAGTGATTTAGTTGGCAGCCTTCTCTCAGAAGATGGCCATCCTAATGAAATTGCCATCAAAAGATTGTTTGAGAAAATTGATCGCGATGGAGACAGCTACATTTCCCAGTCTGAGTTAAAAGAACTACTCAAGAACATCAAGTTCGTCAAAGTATCACTAGATGTGGAGGAAGCAGTTGCCACAGTCATTGAAGAACTTGACATCAACCAAGACCATGTAATCAGCGAGGAAGAATTTGTTGATGGGATCGAAAGATGGCTCAACTCACTTTCCGGTGATGCTTCCATCTCAAAATCTGAGTCTCAAGAAGCAATCTTTGAAACATGGGAAAAGGCTGACATGGTGGTGGAAGAGGAGCAAGGGGAAGGAGTAATTGACAAGTCAACATGGGCATGGTTCAAGGCAATACTATATGTGGTGCTGGGAATTGCTTTGTTATCTGTTCTTGCTGAGCCTCTGATAGAAAGTGTCCATAGTCTTTCTGAAGGAGCTGGGATTCACCCTTTCTTTGTCTCATTCATTTTAGTTCCACTTGCTACAAGTGCTAGAGAAGCAACTTCTGCAGTAAAAGAAgctagaaaaaagaagacaagaaCTACTTCTCTGGCCATTTCTGAGATTTATGGAGGTGTGTTCATGAACAATGTTCTTGGCTTTTTTGCGGTTTCAGTTCTGATATATGTTCGGCAAATCAGATGGGAATTTTCAGCTGAAGCTTTGGTTGTGGCAATTGCTTGTGCTGTAATGGGCTTAAAAGCAAGTTTTTGCTCTACAGTCCCTTTATGGATGGCAATTTTTGCATTCCTCTTGTATCCACTGTCTCTCGTCTTGGTTTATGCACTTAACAAAATTCTGATTTA 2147 0.3843 MTMSKTASFILVLFAAAAVEVQGRFLRDISGSELVSDGVDDAKPDKNNYLLLKGIEFESSEKECKQMYGFLPCSSSIFGHLFLILVYEYLLFYGESFLASGGEQIFKILGPGIFGASAFDLLGALPESLILLVSGLLSTNKETAQDYAYTGVGLLAGSSILLLTVVWGTCVIAGSKKYETHSNFTVTDVADSAYTRLKSFLTGSGITTDLETSYIARIMVFSITPLLIMQIPSFFHFSFGLRSAILIVALIITVIFLFLYFIYQVFQPWIQKRRLEFVKHDHVILKIIEHVQKHTLQRILTKNGTPNVRAIRRIFREINQDGDSGITASEVKRLLFENRLNEIDATEEKEIQKILEIFDMNDDKKINKEEFVYGFTKWLEQTKYAVKKEYLRRDSLKKVYKAFEPWIQNKRKERENQQHLISEILSYVQSDLVGSLLSEDGHPNEIAIKRLFEKIDRDGDSYISQSELKELLKNIKFVKVSLDVEEAVATVIEELDINQDHVISEEEFVDGIERWLNSLSGDASISKSESQEAIFETWEKADMVVEEEQGEGVIDKSTWAWFKAILYVVLGIALLSVLAEPLIESVHSLSEGAGIHPFFVSFILVPLATSAREATSAVKEARKKKTRTTSLAISEIYGGVFMNNVLGFFAVSVLIYVRQIRWEFSAEALVVAIACAVMGLKASFCSTVPLWMAIFAFLLYPLSLVLVYALNKILI 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00906 715 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Bva09g00906 715 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 399 525 - -
Bva09g00906 715 Gene3D - 376 515 - -
Bva09g00906 715 CDD EFh 448 512 IPR002048 GO:0005509
Bva09g00906 715 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Bva09g00906 715 CDD EFh 311 376 IPR002048 GO:0005509
Bva09g00906 715 Gene3D - 264 375 - -
Bva09g00906 715 SUPERFAMILY EF-hand 308 515 IPR011992 -
Bva09g00906 715 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 557 712 - -
Bva09g00906 715 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 391 - -
Bva09g00906 715 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Bva09g00906 715 Pfam EF-hand domain pair 310 375 IPR002048 GO:0005509
Bva09g00906 715 Pfam EF-hand domain pair 447 510 IPR002048 GO:0005509
Bva09g00906 715 Pfam Sodium/calcium exchanger protein 565 708 IPR004837 GO:0016021|GO:0055085
Bva09g00906 715 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Bva09g00906 715 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Bva09g00906 715 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 557 712 - -
Bva09g00906 715 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 8 391 - -
Bva09g00906 715 SMART efh_1 310 338 IPR002048 GO:0005509
Bva09g00906 715 SMART efh_1 487 515 IPR002048 GO:0005509
Bva09g00906 715 SMART efh_1 447 475 IPR002048 GO:0005509
Bva09g00906 715 SMART efh_1 350 378 IPR002048 GO:0005509
Bva09g00906 715 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 399 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00906 Bva-Chr9 4672442 4676772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00906 399 711 EF-hand Containing Proteins AT1G53210 39.692 4.51e-67 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00906 - - gmx:100798009 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00906 09 4672442 4676772 Bva07g01691 07 15900031 15903803 ECH
Bva07g01927 07 17135314 17137192 Bva09g00906 09 4672442 4676772 ECH
Bva09g00906 09 4672442 4676772 Bva09g00906 09 4672442 4676772 ECH