Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00250 ATGTACAAGAACCAGCTTCAAGAGCTGGCCCAGCGGAGCTGCTTCAACCTCCCTTCCTATACGTACATTAGGGAAGGTCCTGATCATGCGCCGAGGTTCAAGGCCACGGTTAACTTTAACTGCGAGATCTTCGAGAGCCCTCACTATTGTTCTACTCTCCGTCAAGCCGAACACTCTGCCGCCGAGGTTGCGCTCAATTCTCTCTCCAACCGCGGACCGTCACACTCGCTTGCCGCGAGGATATTGGACGAGACAGGAGTCTACAAGAATCTCTTGCAGGAAATAGCACAGAGGGTTGGAGCTCCATTGCCCCAATACATGACATTCAGGTCAGGCCTAGGACATCTACCCGTTTTTACTGGGACAGTAGAATTGGCTGGAATCACATTTACTGGTGAACCTGCCAAGAACAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCGTCTTTAAAACAATTGGCAAAAGAAACTGTTAGTTCTTCATCTGAACCAGAGAACAATGATGAACTAGAGCAGATCACTATAGCAAGGGCGTTGCTGAACTACCGTCTGAAGGAAAAGATGGCAAGGTCTAATCCTAATGCTCCAATTCCATTTCCGAAGAAGTTTCAGATTCAAAATCCTAGGCCGACCAGTCCTCAAACGCCCCCTGCTAAATCAAAAATCCTTCCTCTGATTTGCCAGAAGACAGCACCTCGTGTCAGGTCCTCATTGACAACAACAGCAAATGAAAGTCCTCGAAGCAGGGCTCCCCCAGCAGTAGCAACTAGTGACAATCCCGCGGTGCCACCACAGTCTTGTGCACCAGAAAGTCGTTGTGCCCGTCCCCTGAAGTTCCCTGCAGCAGGAGCAGCACCTTACGTCCCTATTCGACAAATGAGATCGGCTTGCCAGGGTATTGCACCTCCAGTGACTATAAGGACTGCAGTACCTGTGTTCTCTGCACCACCGCTTCAACCACCGCCAACTGCCGTTTCCCATCAGATGATTCGGGCCCCTCCTGTACGAGTTGCCCCTCCAGTCACTGTTAGGCAGGCAATTCCAGTATTTTCTGCTCCACCAGTACGAAAAGACGAACCTACTCCCATCCGAAAAGAAGATCCACTTATTCTTATCAGTGCCCTTACACAGCAAGATAAATTGGCAGCTAAAATTCACGAGACACAGACAAGGACCGTGAACAGCACAGCAGAATCTCAGACATTGCAGAGCTTGGAGCAGCTAAAAATTTG 1241 0.4948 MYKNQLQELAQRSCFNLPSYTYIREGPDHAPRFKATVNFNCEIFESPHYCSTLRQAEHSAAEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYMTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETVSSSSEPENNDELEQITIARALLNYRLKEKMARSNPNAPIPFPKKFQIQNPRPTSPQTPPAKSKILPLICQKTAPRVRSSLTTTANESPRSRAPPAVATSDNPAVPPQSCAPESRCARPLKFPAAGAAPYVPIRQMRSACQGIAPPVTIRTAVPVFSAPPLQPPPTAVSHQMIRAPPVRVAPPVTVRQAIPVFSAPPVRKDEPTPIRKEDPLILISALTQQDKLAAKIHETQTRTVNSTAESQTLQSLEQLKI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00250 413 MobiDBLite consensus disorder prediction 238 274 - -
Bva09g00250 413 PANTHER - 1 412 - -
Bva09g00250 413 MobiDBLite consensus disorder prediction 194 225 - -
Bva09g00250 413 Gene3D - 2 83 - -
Bva09g00250 413 SUPERFAMILY dsRNA-binding domain-like 88 161 - -
Bva09g00250 413 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Bva09g00250 413 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 412 - -
Bva09g00250 413 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Bva09g00250 413 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Bva09g00250 413 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Bva09g00250 413 SMART DRBM_3 88 154 IPR014720 -
Bva09g00250 413 SMART DRBM_3 2 69 IPR014720 -
Bva09g00250 413 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Bva09g00250 413 MobiDBLite consensus disorder prediction 238 255 - -
Bva09g00250 413 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Bva09g00250 413 Gene3D - 84 155 - -
Bva09g00250 413 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00250 Bva-Chr9 1263729 1267451 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00250 - - gmx:100815739 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00250 09 1263729 1267451 Bva07g02397 07 19469780 19473690 BWGD
Bva09g00250 09 1263729 1267451 Bva09g00250 09 1263729 1267451 ECH