Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00195 ATGTATCCGAATGATCACCTGCACAGTAACAAAGGAATACGTCGACTCACAGACAGAGAAGCAGCAGCCAAAAAGGTCATCCAAACAAGCCTTCTTCCTGTTTTAAAAGACTCCTTGTGGTTTTCTCTGCCTCTCTTACCCTTTGGTCTCACTCTCGTTCTGCGTCTTCGTTATCGTGCGCTTCGCAAACAATCTCATCCTTCCAGTTCCGTGTTCTTCTCGATCTCTCAACTGGCAATCATGAGTGACGAAGGAGAAAGGGCTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACTGATCAGCAGCTGAAACCTTGCAAATGTGGCTATGAgATATGTGTTTGGTGTTGGCATCATATTATGGACATGGCTGAGAAGGATGAAACAGAGGGGCGATGCCCTGCATGTCGAAATTCTTATGACAAGGAAAAAATTGTAGGGACGGCTGCAAGCTGTGAGAGATTGGTGGCTGAAATTCATATGGAGAGAAAGACTAAGAGCCAGAAAGCAAAGTCAAAATCATCTGAAGGACGGAAACAACTCAGCAGTGTGCGAGTTATTCAGCGGAACCTTGTATACATAGTTGGGCTACCCCTTAATTTGGCAGATGAAGATCTTCTCCAGCAGCGAGAGTATTTTGGTCAGTATGGGAAGGTCATGAAAGTGTCTATGTCTCGAACAGCAGCTGGTGTCATTCAACAGTTTCCAAACAATACTTGTAGTGTATATATTACATActcaaaggaagaagaagcaattCGTTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCATTGAGGGCTTGTTTTGGAACCACAAAGTATTGCCATGCATGGCTCCGAAATATGCCTTGCAGCAATCCAGATTGTTTATATCTGCATGAGATTGGCTCTCAGGAAGATAGTTTCacaaaagatgaaataatttcAGCATACACTAGAAGTCGAGTTCAACAAATCACTGGTGCTGCAAACAATATGCAACGACGTACAGGCAATTCATTGCCTCCTCCAGCTGATGACTATGTGAATAATTATTCAGGGAAACCCATAGTTAAAAATCCTTCAAGTAACTCTTCAAGTATTATGCGAGGTTCACCTCCTAATGGAAGTTCTGGGAGTTCTATAGGTCTTCCTGCTACTGCTGCATGGGGTGCACGAGCTACAAATTGTCAGGCTCCTGCTGGAGGTCAATTATGCTCAAATGGACCATCCAAGCCGATACTTGAAGCAGTTAGTAGCACGCTAGCATTTTCTTCAGCTGTTGCAAGCACAACTCAGGCTTCTGTATTGCAAAGTGATGCAACAAAACACCCCCCATCAAGTGATGGAAGTCATCATATGCTACCAACagttaaaaatgaattgttgAAACCAGTTAAACAATATAATGGCATAGATAACCTCTGTAGTGCAGGTGAAAAAACTGTTACTTCTGATGGTTCTCTGCCACATGTGAATTTGAACAACCAGTTGTCTTCTTTACCATTATCCAGAGATAGTGATGGAGGCAATTTTACTACAGCCAATACAACAGATTCTACTGACATGACTGGGCAATCGGGCAGCACTGGTCCTGAGGAAGCAATTATCGCTACCAATGAAGAGATCCAGAACTTATGCTCTGATTTGTCGTCTGTTAATATTGATAGAAATGCCAGTGATGAACATTATAGTACATCCAGACCTAACAGTCCACCTTCAGATTATGCCTTGACTAAATCTCCTCAAATTCAAGTATCACAACAGCACAGTACTAAAACAGTTAGAGAAGTGGTGATTACAACTGCGGCTGCTAAAGCTGCTGCCTCAGATAACGGGGTGCATGTTTCGAGAGAACAGTTTGACTGGAGATTGGATTCTAAAACTCCAGTTGCATCAATTGGCACTGAAGTTGAAGATGATATAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTAGTTTGTCATTCTCCTTACTTGCCAAATTCATCTAGTTTCAGTCATATATTAAACCACTCTAGTCCTCATCTGCTGCATGGTGAAGTTTATGCAGCTTTAAATGCTGGTTCTCTATCATCTGGTAATAAAGACAATTCTGTATTACATCCATCTAGCATGTTATGTAATGGTTTCCCTGAGAAATTGGTCAGCAGCAGTTCTTCTGGTTTAAATAATGCTAGAGGATGTTCTTTCTTCCCTCAAGATGAAGGAAATGAGCGTTGCATTGGAAAATTAGTTAGTGAACCAGTTAATGCTGGAAATGATACTGCTTTGGACAAGGGTGAGAGCagtataatttcaaatatattgtCCATGGAATTTGATCCTTGGGATGACTCACTAACATCGCCTCAGAATTTGGCAAAGCTGTTGGGTGACAATGATAACCAGTCCagtccattaaaaaaatctagttcttggaaaatgcaaaataaCAGTCAGTCTCGGTTCTCTTTTGCAAGGCGAGAGGAATCCAAATTCCATTCATTTGATGTACATCATTCATATGGTGTCAACGAGCAATTGCCAAAGAACCATTCATTCACCCAGGATTTTGCTGAAAGAGACGTGTATATGGATAAGTTGGGTCTGGTAAATGCATTCTCTACCAGGAACCTTGAGGAATCTGAAAATCTAGGCAGTGGCCGCTTTGTTACTTCTTCTAATAAGCTTCCTGCTGTTTCAAGAGCTCAAATATCAGCTCCACCAGGATTTTCAGTTCCCAACAGGCCACCCCCACCAGGTTTTCCCTCACAAGAGAGAGTTGAGCAGGCTTTTGACCCCCAGCCTGGGAATTCCCTGCTCGACCCTTCCTTACTGAGAAATTCATATCAGACTCCTATCAATGCAACAATCGGTAGTGCTGGGGATATTGAATTCATGGATCCTGCTATTTTGGCTGTTGGTAAGGGGAGACTTCAAGGTACATTAAACAGCCCAGGGTTGGACATGAGATCGAATTTCCCTTCACAACTAAATTACTTTGAAAACGAGGCCAGACTTCAATTGTTGATGCAAAGATCTCTCTCACCTCAGCAAAACCACAGATTTTCTGAAATGGGGCATACCTTTTCTCAACACGGGGATTCTTATGGAATTTCTTCAAGGTTAGATCAGTCACAAGTCAGCAATTTGGCCCCCTTTGCTCAGTTGTCCTTGCAGCAACCTCGAAATGCAATTTTGTCAAATGGCCAATGGGATGGGTGGAATGAGGTCCAGAATGGAAATAATAGTCTGGGGGTGGCTGAACATCTGAGAAATGAAAGGCTTGGATTCAATAAGTTTTATACTGGATATGAGGATTCAAAATATCGGATGCCAAATGGTGGGGATCTTTACAATAGAACATTTGGGATGTG 3356 0.4106 MYPNDHLHSNKGIRRLTDREAAAKKVIQTSLLPVLKDSLWFSLPLLPFGLTLVLRLRYRALRKQSHPSSSVFFSISQLAIMSDEGERACPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACRNSYDKEKIVGTAASCERLVAEIHMERKTKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVMKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGAANNMQRRTGNSLPPPADDYVNNYSGKPIVKNPSSNSSSIMRGSPPNGSSGSSIGLPATAAWGARATNCQAPAGGQLCSNGPSKPILEAVSSTLAFSSAVASTTQASVLQSDATKHPPSSDGSHHMLPTVKNELLKPVKQYNGIDNLCSAGEKTVTSDGSLPHVNLNNQLSSLPLSRDSDGGNFTTANTTDSTDMTGQSGSTGPEEAIIATNEEIQNLCSDLSSVNIDRNASDEHYSTSRPNSPPSDYALTKSPQIQVSQQHSTKTVREVVITTAAAKAAASDNGVHVSREQFDWRLDSKTPVASIGTEVEDDITSFDNQRLKDPEVVCHSPYLPNSSSFSHILNHSSPHLLHGEVYAALNAGSLSSGNKDNSVLHPSSMLCNGFPEKLVSSSSSGLNNARGCSFFPQDEGNERCIGKLVSEPVNAGNDTALDKGESSIISNILSMEFDPWDDSLTSPQNLAKLLGDNDNQSSPLKKSSSWKMQNNSQSRFSFARREESKFHSFDVHHSYGVNEQLPKNHSFTQDFAERDVYMDKLGLVNAFSTRNLEESENLGSGRFVTSSNKLPAVSRAQISAPPGFSVPNRPPPPGFPSQERVEQAFDPQPGNSLLDPSLLRNSYQTPINATIGSAGDIEFMDPAILAVGKGRLQGTLNSPGLDMRSNFPSQLNYFENEARLQLLMQRSLSPQQNHRFSEMGHTFSQHGDSYGISSRLDQSQVSNLAPFAQLSLQQPRNAILSNGQWDGWNEVQNGNNSLGVAEHLRNERLGFNKFYTGYEDSKYRMPNGGDLYNRTFGM 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00195 1118 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 270 IPR000504 GO:0003723
Bva09g00195 1118 SMART rrm1_1 191 272 IPR000504 GO:0003723
Bva09g00195 1118 CDD mRING-HC-C4C4_CNOT4 89 138 IPR039515 -
Bva09g00195 1118 Gene3D - 191 272 IPR012677 -
Bva09g00195 1118 MobiDBLite consensus disorder prediction 556 587 - -
Bva09g00195 1118 MobiDBLite consensus disorder prediction 791 812 - -
Bva09g00195 1118 MobiDBLite consensus disorder prediction 482 528 - -
Bva09g00195 1118 SUPERFAMILY RING/U-box 81 146 - -
Bva09g00195 1118 CDD RRM_CNOT4 185 284 IPR034261 -
Bva09g00195 1118 ProSiteProfiles Zinc finger RING-type profile. 89 137 IPR001841 -
Bva09g00195 1118 Pfam RING/Ubox like zinc-binding domain 89 141 - -
Bva09g00195 1118 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 75 1118 IPR039780 GO:0004842|GO:0030014
Bva09g00195 1118 MobiDBLite consensus disorder prediction 433 452 - -
Bva09g00195 1118 MobiDBLite consensus disorder prediction 352 380 - -
Bva09g00195 1118 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 276 IPR000504 GO:0003723
Bva09g00195 1118 SUPERFAMILY RNA-binding domain, RBD 184 270 IPR035979 GO:0003676
Bva09g00195 1118 SMART rrm2_1 191 272 IPR003954 GO:0003676
Bva09g00195 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 157 IPR013083 -
Bva09g00195 1118 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 75 1118 - -
Bva09g00195 1118 MobiDBLite consensus disorder prediction 326 380 - -
Bva09g00195 1118 MobiDBLite consensus disorder prediction 899 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00195 Bva-Chr9 972827 981207 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00195 K10643 - gmx:100801880 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02448 07 19746796 19755140 Bva09g00195 09 972827 981207 BWGD
Bva09g00195 09 972827 981207 Bva09g00195 09 972827 981207 ECH