Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02448 ATGAGTGACGATGGAGAAAGGACTTGTCCTCTCTGTGCAGAGGAGATGGATTTGACAGATCAGCAGCTGAAACCTTGCCAATGTGGCTATGagATATGTGTTTGGTGTTGGCATCACATTATGGACATGGCCGAGAAGGATGAAACAGAGGGGAGATGCCCTGCCTGTCGAAATCCCTATGACAAGGAAAAAATTGTAGGGATGGCTGCAAGCTGTGAGAGATTGGTGGCTGAAATTCATATGGAGAGAAAGATGAAGAGCCAGAAGGTAAAGTCCAAATCATCTGAAGGGCAGAAACAACTCAGCAGTGTACGAGTGATTCAGCGGAACCTAGTATATATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCTTCTTCAGCAGCGAGAGTATTTTGGTCAGTATGGGAAGGTCATGAAAGTTTCTATGTCTAGGACAGCAGCTGGCGTTATTCAACAATTTCCAAACAATACTTGTAGTGTATATATTACTTActcaaaggaagaagaagcaattCGTTGTATTCAAAATGTACATGGATTTGTCTTGGAGGGTAGACCATTAAGGGCTTGTTTTGGAACCACAAAGTATTGCCATGCATGGCTACGAAATGTGCCTTGCAGCAATCCGGATTGTTTATATCTGCATGAGGTTGGCTCTCAAGAAGATAGTTTCACAAAGGATGAAATAATTTCAGCCTACACTAGAAGCCGAGTTCAACAGGCAAACAATATGCAGCGGCGTTCAGGGAATGCATTGCCACCTCCAGTTGATGACTACATGAATAATTATTCTGGAAAACCCATTGTCAAAAATCCTTCTAGTAACTCTTCAAGTATTATGAGAGGTTCACCTCCTAATGGGAGTTCTGGGAGATCCATAGGTCTTCCTGCTGCTGCTGCATGGGGTACTCGAGCGACAAATTCTCAGGCCCCTGCTGAAGGTCTATTATGTTCTAATGGACCATCCAAGCCGATACCTGAAGCAGTTGGTAGCACACTAGCATTTTCTTCAGCTGTTGTAGGCACAACTCAGGCTTCTGCATTGCATAGTGATGCAGCAAAGCGGCCTCCATCAAGTGATGGAAGTCATAATATGCTGCCAAGagttaaaaatgaattgttgAAACCAGTTAAACAATACAATGGTATAGATAACCTCAGTAGTACAGGTGAAAACACTGTAACTTCTGATGCTTCTCTGCCACATGAGAATTTGAACTGCCAGTTGTCTTCTCTACCATCATCCAGAGATAGTGATAGAGGCAGTTCTAATACAGCAAATACAAATTCTACTGATATCACCGGGCAGTTGGGAAGTTTTGGTCCTGAGGAAGCAGTTATTGCTACCAGTGAAGAGATCCAGAACTTGTGTTCTGATTTGTCCTCTGTTAATATCGATAGAAATGCTGGCAATGAACATTATAGTACAGCCAGACCTAACAGTCCACCTTCTGATCATGTCTTGATTAAGTCTCCTAAGATTCAAGGATCACAACAGCACAATACTGAGAAAATTAGAGATGCGGTTGTTACAACTGCTGTTGCTAAAGCTGCTACCTCAAATGTTGGCGTGTGTGTTTCAAGAGAACAGTATGACTGGAGTTTGGATTCTCAAACCCCAGTAGCATCAGTCACCACTGAAGTTGAAGATGATATAACATCTTTTGATAATCAAAGACTCAAGGATCCTGAAGTAGTTTGTCGTTCTCCTTACTTGCCAAATTCATCTAGTTTCCATCATGTCTCAAACCAATCTAGTCCTCATCTTTTGCAGCATGGTGAAGCTTATGCAGCTTTAAATGCTGGTTCTTTATTATCTGATGATAAAATTAAGGATGATTCAGTATTACATTCATCTAGCATTTTATGTAATGGTTTCCCTGAGAAATCGGTCAGCAGCCGTTCTTCTGGTTTAAACAGTGCTAGAGGatgttctttcttccttcaagATGAAAGAAATGAGCATTGTGTTGGAAGATTAGTTGGTGAGCCAGTTAATACTGGAAAAGATACTGCTCTGGATAAGGGTGAGAGTagtataatttcaaatatattgtCTATGGACTTTGATCCCTGGGATGACTCATTAACATCACCTCAGACTTTGGCTAAATTGTTGGGCAACAATGATAACCAGTCCggtccaataaaaaaatctagttCTTGGAAAGTGCAAAATAACAGTCAGTCTAGATTCTCTTTTGCAAGGCAAGAGGAACCCAAATTCCATTCATTGGATTTACATCGTTCATATAGTGTCAACGAGCAAATGCCAAAGAACCATTCACTCATCCATGATTTTGCAGACAGAGACTTGTATATGGATAAGTTGAGTCCGGTAAATACATTTCCTACCAGTAACCTTGAGGAATCTGAAAGTCTAGGCAGTGGTCACTTTGTTGCTTCTTCTAATAAGCTTTCTGCTGTTTCAAGAGCTCAAATTTCAGCTCCTCCAGGATTTTCAGTTCCAAACAGGCCACCACCACCTGGTTTTCCTTCCCAAGAGAGAGTTGAGCCGGGTTTTGACTCCATTCCTGGGAATTCCCTGGTAGACTCCTCTTCCTTACTGAGAAGTTCGTATCAGTTACCCACCACTGGATCAATCAGTAGTGCTGGGGATATTGAGTTCATGGATCCTGCTATTTTGGCTGTTGGTAAGGGGAGACTTCAAGGTGCACTAAACAGCCCTGGGTTGGATATGAGATCGAATTTCCCTTCACAATTAAGTTACTTTGAAAACGAGGCCAGACTTCAATTGTTGATGCAAAGATCTCTCTCATCTCAGCAAAACCACAGATTTTCTGAAGTTGGGAATACCTTTTCCCAACTAGGGGATTCTCATGGAATTTCGTCAAGGTTAGATCAGTCACAAGTCAGCAATTTGGCTCCTTTTGCTCAGTTGTCCCTGCAACAATCTAGAAATGCAATTTTACCAAATGGCCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAATAGTCCAGGCGTGGCTGAACTTATGAGAAATGAAAGACTTGgatttaataaattctataCCGGATATGAGGATTCAAAATATCGGATGCCAAATGCTGGGGATCTTTACAACAGAACATTTGGGATGTG 3110 0.4064 MSDDGERTCPLCAEEMDLTDQQLKPCQCGYEICVWCWHHIMDMAEKDETEGRCPACRNPYDKEKIVGMAASCERLVAEIHMERKMKSQKVKSKSSEGQKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVMKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQANNMQRRSGNALPPPVDDYMNNYSGKPIVKNPSSNSSSIMRGSPPNGSSGRSIGLPAAAAWGTRATNSQAPAEGLLCSNGPSKPIPEAVGSTLAFSSAVVGTTQASALHSDAAKRPPSSDGSHNMLPRVKNELLKPVKQYNGIDNLSSTGENTVTSDASLPHENLNCQLSSLPSSRDSDRGSSNTANTNSTDITGQLGSFGPEEAVIATSEEIQNLCSDLSSVNIDRNAGNEHYSTARPNSPPSDHVLIKSPKIQGSQQHNTEKIRDAVVTTAVAKAATSNVGVCVSREQYDWSLDSQTPVASVTTEVEDDITSFDNQRLKDPEVVCRSPYLPNSSSFHHVSNQSSPHLLQHGEAYAALNAGSLLSDDKIKDDSVLHSSSILCNGFPEKSVSSRSSGLNSARGCSFFLQDERNEHCVGRLVGEPVNTGKDTALDKGESSIISNILSMDFDPWDDSLTSPQTLAKLLGNNDNQSGPIKKSSSWKVQNNSQSRFSFARQEEPKFHSLDLHRSYSVNEQMPKNHSLIHDFADRDLYMDKLSPVNTFPTSNLEESESLGSGHFVASSNKLSAVSRAQISAPPGFSVPNRPPPPGFPSQERVEPGFDSIPGNSLVDSSSLLRSSYQLPTTGSISSAGDIEFMDPAILAVGKGRLQGALNSPGLDMRSNFPSQLSYFENEARLQLLMQRSLSSQQNHRFSEVGNTFSQLGDSHGISSRLDQSQVSNLAPFAQLSLQQSRNAILPNGQWDGWNEVQSGNSPGVAELMRNERLGFNKFYTGYEDSKYRMPNAGDLYNRTFGM 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02448 1036 MobiDBLite consensus disorder prediction 348 368 - -
Bva07g02448 1036 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Bva07g02448 1036 SMART rrm1_1 111 192 IPR000504 GO:0003723
Bva07g02448 1036 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1036 IPR039780 GO:0004842|GO:0030014
Bva07g02448 1036 CDD RRM_CNOT4 105 204 IPR034261 -
Bva07g02448 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Bva07g02448 1036 MobiDBLite consensus disorder prediction 406 439 - -
Bva07g02448 1036 MobiDBLite consensus disorder prediction 406 440 - -
Bva07g02448 1036 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Bva07g02448 1036 MobiDBLite consensus disorder prediction 241 296 - -
Bva07g02448 1036 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Bva07g02448 1036 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Bva07g02448 1036 Gene3D - 111 192 IPR012677 -
Bva07g02448 1036 SUPERFAMILY RING/U-box 3 66 - -
Bva07g02448 1036 MobiDBLite consensus disorder prediction 268 292 - -
Bva07g02448 1036 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Bva07g02448 1036 MobiDBLite consensus disorder prediction 818 846 - -
Bva07g02448 1036 MobiDBLite consensus disorder prediction 472 503 - -
Bva07g02448 1036 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Bva07g02448 1036 MobiDBLite consensus disorder prediction 822 836 - -
Bva07g02448 1036 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1036 - -
Bva07g02448 1036 SMART rrm2_1 111 192 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02448 Bva-Chr7 19746796 19755140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02448 K10643 - gmx:100801880 1432.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02448 07 19746796 19755140 Bva09g00195 09 972827 981207 BWGD
Bva07g02448 07 19746796 19755140 Bva07g02448 07 19746796 19755140 ECH