Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00178 ATGTCGGGGTTACTTAATTCTTCTCTGAACGGATCTGCTTCAAATCTTCCAGATGGTACTGGGCGGTCTTTTGCTACATCGTTCTCTGGTCAGTCTGGTGCGGCCTCCCCTGTTTTTCATCATACTGGAGCTATTCAAGGGTTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCAGGTGCATTGACGTCAAGAAATTCAACAATCAACAGTGTTCCATCTGGAGGGGTTCAACAACCTACTGGCAGCCTTTCTAGTGGAAGATTTGTATCAAATAATCTTCCTGTAGCTATTTCCCAGTTATCTCATGGCAGCTCTCATGGACATTCTGGAGTCACCAATAGAGGAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATTACAAGTTCTATGGGAAACATGGTTGGTGGGGGGAACATTGGAAGGAGTATAAGCTCTGGTGGAGGATTATCCGTCCCTGGTCTTGCTTCTCGTCTAAATTTGAGTGGGAACGGTGGATCTGGTGGTTTAAGTGTGCAAGGACAAAATAGGTTGATGAGTGGTGTGCTGCCACAAGGATCTCCACAGGTAATCTCAATGCTAGGAAATTCCTATCCTAGTGCTGGAGGCCCACTTTCTCAAAGCCATGTTCAAGCTGTTAATAATTTGAACTCCATGGGGATGTTGAATGATGTAAATTCTAATGACAACTCACCTTTTGACATGAATGACTTCCCTCAATTGACAAGTCGTCCCAGCTCTGCTGGGGGACCTCAAGGACAATTAGGTTCACTACGAAAGCAGGGTATTGGTGTTAGTCCCATTGTTCAACAAAATCAAGAGTTTAGCATCCAGAATGAGGATTTCCCTGCTTTACCAGGATTTAAAGGTGGTAATGCAGATTATACTATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTATCCATGATGCAATCTCAGAATTTCTCTATGGGGAGATCTGCTGGATTCAGCTTAGGGGGAACATATTCATCACATCGTCCACAGCAACAGCAACAACATGCCCCATCAGTCAGCAGTGGTGGTGTCTCCTTTTCATCTGTTAACAATCAGGATCTTCTCCATCTACATGGCTCGGATATGTTTCCATCACATTCAACTTATCATTCACAGACCAGTGGACCTCCTGGCATTGGACTGAGGCCTTTAAATTCTCCAAATACTGTTTCTAGTATGGGATCATATGACCAGCTTATTCAGCAGTATCAACAGCACCAAAACCAGTCGCAGTTTCGTCTTCAACAAATGTCAGCTGTAAATCAGTCTTTCAGAGATCAGAGTATGAAGTCAATGCACTCTGCCCAATCTACTCCCGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATTAGGATGAGTGATCCTGATCTGACATCTCTTGCACTTGGAATTGATCTTACAACACTTGGTTTAAATTTGAACTCGTCGGAAAATCTTCACAAGACTTTTGGGTCGCCATGGTCTGATGGACCGGCTAAGGGTGACCCAGAGTTTAATGTTCCACAATGTTATTTTGCTAAACAGCCACCTGCCCTACATCAAGGTTATTTCTCAAAGTTTACAGTGGAAacattattttacatattttacaGCATGCCCAAAGACGAGGCGCAATTACACGCTGCGAATGAGCTTTACAATAGGGGCTGGTTTTATCACAAAGAGCATCGTTTGTGGTTCATAAGAGTGCCCAACTCGGAGCCGCTTGTTAAAACTAGCTCATACGAGAGAGGATCTTATCATTGTTTTGATCCAAACACATTTGAAACAGTTCGCAAGGACCATTTTGTTCTCCAATATGAAATGTTGGAAAAGAGACCACCTCTGCCTCAACATTG 1883 0.4323 MSGLLNSSLNGSASNLPDGTGRSFATSFSGQSGAASPVFHHTGAIQGLHNIHGSFNVPNMPGALTSRNSTINSVPSGGVQQPTGSLSSGRFVSNNLPVAISQLSHGSSHGHSGVTNRGGLGVSPILGNAGPRITSSMGNMVGGGNIGRSISSGGGLSVPGLASRLNLSGNGGSGGLSVQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQAVNNLNSMGMLNDVNSNDNSPFDMNDFPQLTSRPSSAGGPQGQLGSLRKQGIGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYTMDMHQKEQLHDNAVSMMQSQNFSMGRSAGFSLGGTYSSHRPQQQQQHAPSVSSGGVSFSSVNNQDLLHLHGSDMFPSHSTYHSQTSGPPGIGLRPLNSPNTVSSMGSYDQLIQQYQQHQNQSQFRLQQMSAVNQSFRDQSMKSMHSAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDGPAKGDPEFNVPQCYFAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLHAANELYNRGWFYHKEHRLWFIRVPNSEPLVKTSSYERGSYHCFDPNTFETVRKDHFVLQYEMLEKRPPLPQH 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00178 627 Pfam NOT2 / NOT3 / NOT5 family 496 618 IPR007282 GO:0006355
Bva09g00178 627 PANTHER CCR4 NOT-RELATED 120 627 IPR040168 GO:0030015
Bva09g00178 627 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 120 627 - -
Bva09g00178 627 MobiDBLite consensus disorder prediction 330 359 - -
Bva09g00178 627 Gene3D - 444 627 IPR038635 -
Bva09g00178 627 MobiDBLite consensus disorder prediction 228 265 - -
Bva09g00178 627 MobiDBLite consensus disorder prediction 228 260 - -
Bva09g00178 627 PANTHER CCR4 NOT-RELATED 2 122 IPR040168 GO:0030015
Bva09g00178 627 MobiDBLite consensus disorder prediction 371 392 - -
Bva09g00178 627 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 122 - -
Bva09g00178 627 MobiDBLite consensus disorder prediction 378 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00178 Bva-Chr9 853564 859781 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00178 K12605 - pvy:116109088 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00178 09 853564 859781 Bva07g02464 07 19848426 19855654 BWGD
Bva09g00178 09 853564 859781 Bva09g00178 09 853564 859781 ECH