Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02337 ATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATCTTACAGTTTCTGGATGAGGAGAAGTTCAAAGATACTGTTCATAAGCTTGAACAAGAGTCcggatttttctttaatatgaaatattttgaggATGAAGTGCACAATGGCAATTGGGATGAGGTAGAAAAGTACCTCTCTGGTTTTACAAAAGTAGATGATAATCGGTACTCTATGAAGATATTTTTCGAGATAAGGAAGCAGAAGTACCTAGAGGCATTAGATAAGCATGACCGGTCCAAGGCTGTTGATATATTAGTGAAGGACTTGAAAGTGTTTGCTACATTTAATGAAGAACTATTCAAGGAAATCACACAGCTTTTGACACTGGAGAATTTTAgGGAAAATGAACAACTGTCCAAGTATGGTGATACAAAGTCTGCAAGAGCTATCATGTTGGTTGAGCTGAAAAAGCTGATCGAAGCAAATCCATTATTCCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACCCTAATCAATCAAAGTTTGAACTGGCAGCACCAACTCTGTAAGAGCCCAAGGCCAAATCCTGATATAAAAACTCTTTTCGTGGATCACTCATGTGGACAACCAAATGGTGCACGGGCTCCATCACCTGCTAATAATCCACTGCTTGGATCCTTACCTAAGGCTGGAGGGTTTCCTCCACTTGGTGCTCATGGGCCTTTCCAACCTACCCCAGCACCAGTGCCAGTGCCAACACCACTGGCGGGTTGGATGTCAAACCCTACGACTGTAGCTCATGCTGCAGTTTCTGGTGGAGGAGCTATAGGTCTTGGTGCACCGTCAATCCCAGCTGCTTTAAAGCACCCTAGGACCCCTCCAACTAATCCTTCTGTTGACTACCCATCTGGAGATTCTGACCATGTTTCAAAGAGAACAAGGCCTTTGGGGATATCGGATGAGGTGAATCTTCCTGTTAATGTGCTGCCAGCAGCATTCCCAGGTCATGGTCATGGTCACGCATTTAGTGCACCTGATGACTTGCCAAAGACTGTCGCTCGAACACTAAACCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAGTCTCTACTTCTTGTTGGTACCAATGTGGGGGACATTGCATTATGGGAAGTGGGTTCACGGGATCGATTAGTCTCGAGGAACTTCAAAGTTTGGGAACTTAGTGCTTGTTCAATGCCATTGCAGGCCGCTCTTGTCAAAGACCCCAGTGTTTCTGTCAATCGTGTCATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCCTACTCAAGGCACATAGTTCAGATATACTCTTATCATGGTGGGGATGAAGTAAGACAGCACCTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCGTTTTCGCACCCAAATAAGCAACTATGTGTAATAACCTGTGGTGATGACAAGACTATTAAGGTTTGGGATGCTGCTACGGGTGCAAAGCAGTACACTTTCGAAGGTCATGAGGCTCCAGTTTATTCTGTTTGTCCTCACTTTAAAGAAAACATTCAGtttatattttctacTGCATTAGATGGAAAGATAAAAGCATGGTTATATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACTACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGTGGAACCAGTAAAGATGGGGAATCCTCGATTGTTGAGTGGAATGAAAGTGAGGGAGCAGTAAAAAGGACTTACCAAGGGTTCCGTAAGAGATCTTTGGGTGTTGTGCAATTTGATACAACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATTAAATTCTGGGACATGGACAATGTTCAACTTTTGACTACTGTTGATGCTGATGGAGGTCTTCCAGCAAGCCCTCGTATCCGTCTCAACAAGGATGGAACTCTATTAGCCGTCTCTGCTAATGAGAATGGAATCAAAATTTTAGCAAATGCAGATGGTATTCGATTGTTGCGTACATTAGAGAATTCTTTATATGATGCATCAAGAACATCTGAAGCCATGGCAAAGCCTACTATAAGTCCAATTTCAGCTACTGCTGCTGTTGCAACTAGTGCTGCACTTGCAGAGAGGGGCTCACCAGTGGTTGCTATTGTTGGAATGAATGGTGATGCCCGTAACTTGGGTGATGTAAAACCTAGAATAACTGAAGAATCCAATGACAAATCGAAGATATGGAAGCTGACTGAAATCAATGAACAAACTCAATGCAGATCCTTGAAGCTGCCTGAGAATCTAAGAGCAACCAAGATATCAAGGTTGATATATACTAATTCAGGTAATGCTATACTGGCATTAGCATCAAATGCCATTCATTTGCTCTGGAAATGGCAGCGAAGTGACCGTAATTCTTCTGGCAAGGCCACTGCCACTGTGTCACCTCAGTTGTGGCAACCATCAAGTGGCAACCTGATGACTAATGACATTACTGACAGCAACCCTGAGGATGCTGTTCCCTGCTTTGCTCTCTCCAAGAATGATTCTTATGTTATGTCTGCATCTGGAGGGAAGATTTCCTTGTTTAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCTCCCGCAGCAACATTTCTTGCCTTCCATCCTCAGGACAACAATATTATTGCTATTGGTATGGATGATTCAACCATTCAGATATATAATGTCCGTGTAGATGAGGTCAAAAGTAAACTCAAAGGTCATACTAAAAGAATAACTGGCCTTGCATTCTCTCACGTATTGAATGTGCTAGTATCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAAGACTAGATTTCTGCAGCTTCCTGCTGGGAGGACTCAAGCAGCCCAAGCAGATACCCGTGTGCAGTTTCATCAGGATCAGATACACTTCTTGGTGGTTCATGAAACTCAGCTTGCCATATATGAAACAAGTAAATTAGATTGTCTAAAGCAGtGGGTACCACGAGATTCTGCTGCTCCAATATCTCATGCAACTTTCTCATGCGATAGCCAGCTGATATATGCCAGTTTCTTGGATGCAACAGTCTGTGTATTTAATTCTTCAAACCTTAGATTACGTTGTCGTATAAATCCTTCTGCATATCTTCAACCTAGTGTCagCTCCGCTGTACAACCGCTTGTAATTGCAGCACATCCACAAGAAGCAAATCAGTTTGCTGTAGGACTGTCAGATGGTGGAGTTCATGTATTTGAGCCACTTGAATCAGAAGGCAAGTGGGGTGCGCCTCCGCCCGTTGAGAATGGATCAGCAAGCAATATGGCAACCACTTCAGTTGGAGCTTCTTCAGATCAAGGCcagagata 3407 0.4279 MSSLSRELVFLILQFLDEEKFKDTVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKSPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPLGISDEVNLPVNVLPAAFPGHGHGHAFSAPDDLPKTVARTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRDRLVSRNFKVWELSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHFKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRLNKDGTLLAVSANENGIKILANADGIRLLRTLENSLYDASRTSEAMAKPTISPISATAAVATSAALAERGSPVVAIVGMNGDARNLGDVKPRITEESNDKSKIWKLTEINEQTQCRSLKLPENLRATKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSSGKATATVSPQLWQPSSGNLMTNDITDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKTRFLQLPAGRTQAAQADTRVQFHQDQIHFLVVHETQLAIYETSKLDCLKQWVPRDSAAPISHATFSCDSQLIYASFLDATVCVFNSSNLRLRCRINPSAYLQPSVSSAVQPLVIAAHPQEANQFAVGLSDGGVHVFEPLESEGKWGAPPPVENGSASNMATTSVGASSDQGQR 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02337 1135 SUPERFAMILY WD40 repeat-like 354 668 IPR036322 GO:0005515
Bva08g02337 1135 MobiDBLite consensus disorder prediction 1102 1135 - -
Bva08g02337 1135 SMART Lish 4 36 IPR006594 GO:0005515
Bva08g02337 1135 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1135 - -
Bva08g02337 1135 Gene3D - 331 519 IPR015943 GO:0005515
Bva08g02337 1135 Pfam WD domain, G-beta repeat 921 954 IPR001680 GO:0005515
Bva08g02337 1135 Pfam WD domain, G-beta repeat 459 493 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 915 954 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 540 583 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 452 493 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 407 446 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 496 537 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 832 869 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 346 385 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 872 912 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 1006 1047 IPR001680 GO:0005515
Bva08g02337 1135 SMART WD40_4 586 626 IPR001680 GO:0005515
Bva08g02337 1135 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Bva08g02337 1135 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1135 IPR027728 GO:0006355
Bva08g02337 1135 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Bva08g02337 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Bva08g02337 1135 Gene3D - 520 689 IPR015943 GO:0005515
Bva08g02337 1135 ProSitePatterns Trp-Asp (WD) repeats signature. 480 494 IPR019775 -
Bva08g02337 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 963 IPR001680 GO:0005515
Bva08g02337 1135 Gene3D - 809 1100 IPR015943 GO:0005515
Bva08g02337 1135 MobiDBLite consensus disorder prediction 280 309 - -
Bva08g02337 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 502 IPR001680 GO:0005515
Bva08g02337 1135 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 954 - -
Bva08g02337 1135 SUPERFAMILY WD40 repeat-like 837 1100 IPR036322 GO:0005515
Bva08g02337 1135 MobiDBLite consensus disorder prediction 1116 1135 - -
Bva08g02337 1135 SMART ctlh 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02337 Bva-Chr8 15119461 15127118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02337 457 633 Miscellaneous Gene Families AT5G08390 24.444 6.61e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02337 - - gmx:100782671 2092.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02337 08 15119461 15127118 Bva02g02538 02 23951362 23958823 ECH
Bva08g02337 08 15119461 15127118 Bva08g02337 08 15119461 15127118 ECH