Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02538 ATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATCTTACAGTTTCTGGATGAGGAAAAGTTCAAAGACACTGTTCACAAGCTGGAACAAGAGTctggatttttctttaatatgaaatattttgaggATGAAGTGCACAATGGCAATTGGGATGAGGTAGAAAAATACCTCTCTGGTTTTACAAAAGTAGATGATAATCGGTACTctatgaagattttttttgagataagGAAGCAGAAGTACCTAGAGGCATTAGATAAGCATGACCGGTCCAAGGCTGTTGAAATATTAGTGAAGGACTTGAAAGTGTTTGCTACATTTAATGAAGAACTATTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAgGGAAAATGAACAACTGTCTAAGTATGGTGATACAAAGTCCGCAAGAGCTATCATGTTGGTTGAGCTCAAAAAGCTGATTGAAGCAAATCCGTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAGAACTCGAGGTTACGGACTCTCATAAACCAAAGTTTGAATTGGCAGCACCAACTTTGTAAGAACCCAAGGCCAAATCCAGATATAAAAACTCTTTTTGTGGATCACTCGTGTGGACAACCTAATGGTGCACGGGCTCCATCACCTGCTAATAATCCACTACTTGGATCCTTGCCAAAGTCTGGAGGCTTTCCTCCACTCGGTGCTCATGGGCCTTTTCAACCTACCCCAGCACCAGTGCCAATGCCAACACCCCTAGCAGGTTGGATGTCAAATCCTACAACTGTAGCTCACCCGGCAGTTTCTGGAGGAGGAGCAATAGGTCTTGGTGCTCCATCAATCCCAGCTGCTTTAAAGCATCCTAGAACCCCTCCAACTAATCCTTCTGTTGACTACCCATCTGGGGATTCCGACCATGTTTCAAAGAGAACAAGACCTTTGGGGATATCGGATGAGGTGAATCTACCTGTAAATGTGTTGCCAGCAACATTCCAAGGTCATGGTCATGGTCATGGTCAGGCTTTTAGTGCACCTGATGACTTGCCAAAGACAGTCACACGAACTCTGAATCAGGGTTCATCTCCTATGAGCATGGACTTCCATCCAGTACAACAGACTCTACTTCTTGTTGGTACCAATGTGGGGGACATTGCATTATGGGAAGTGGGTTCAAGGGAGCGATTGGTCTCAAGGAACTTCAAAGTTTGGGAGCTTAGTGCTTGTACAATGCCCCTGCAGGCTGCTCTTGTCAAAGACCCTAGTGTCTCTGTCAATCGTGTCATTTGGAGTCCTGATGGTGCCTTATTTGGAGTTGCCTACTCAAGACACATAGTTCAGATATACTCTTATCCTGGTGGGGATGAAGTACGACAACACCTAGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCACCCAAATAAGCAACTGTGTGTAATAACCTGTGGTGATGACAAGACCATTAAGgTTTGGGATACTGCTACGGGTGCAAAACAGTATACTTTTGAAGGTCATGAAGCTCCAGTTTATTCTGTCTGCCCTCACTTCAAAGAAAACATTCAGTTCATATTCTCTACAGCATTAGATGGAAAGATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGACGGTACAAGGCTCTTTTCATGTGGGACCAGTAAAGATGGGGAATCCTCAATTGTTGAGTGGAATGAAAGTGAGGGAGCTGTAAAAAGGACTTATCAAGGGTTCCGTAAGCGATCTTTGGGTGTTGTGCAATTTGATACAACGAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAGTTCTGGGACATGGACAATGTTCAGCTTTTGACTACTGTTGATGCTGATGGAGGTCTTCCAGCAAGCCCACGCATCCGTTTTAACAAGGATGGAACTCTGTTAGCTGTCTCTGCAAATGAGAATGGAATCAAAATTTTAGCAAACACAGATGGTATTCGATTGTTGCGTACATTAGAGAATTCTTTATATGACGCATCAAGAACATCAGAAGCCATGGCAAAGCCTACCATAAGTCCAATTTCAGCTGCTGCAGCAACTAGTGCTGCACTTGTGGAGAGGGGCTCATCAGTGGTATCTATTACTGGAATGAATGGTGATGCCCGTAATTTGGGTGATGTAAAACCTAGAATAACTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTGACTGAAATCAATGAACAAATTCAATGTAGATCCTTGAAGCTGCCTGAGAATCTGAGAGTAACCAAGATATCAAGGTTGATATATACTAATTCAGGTAATGCTATACTGGCATTAGCATCAAATGCTATTCATTTGCTTTGGAAATGGCAGCGAAGTGACCGTAATTCTGCTGGCAAGGCCACCGCCTCTGTGTCACCTCAGTTGTGGCAACCATCAAGTGGCATCCTGATGACTAATGACGTTACTGACAGCAATCCTGAGGATGCTGTACCTTGCTTTGCTCTTTCCAAGAATGATTCTTATGTAATGTCAGCATCTGGAGGGAAGATTTCCTTGTTTAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCGCCTGCAGCAACATTCCTTGCCTTCCATCCTCAGGATAACAATATTATTGCTATTGGTATGGATGATTCCACCATTCAGATATATAATGTCCGTGTAGATGAGGTTAAAAGTAAACTCAAAGGTCATACTAAAAGAATAACTGGCCTTGCTTTCTCCCACGTATTAAATGTGCTAGTATCATCCGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAAGACTAGATTTCTGCAGCTTCCTGCTGGGAGGACTCCAACAACACAGGCGGATACCCGTGTACAGTTTCATCAGGATCAGATACACTTCTTGGTGGTTCATGAAACTCAACTTGCCATATATGAAACAACTAAATTAGATTGTCTAAAGCAGTGGGTGCCACGAGATTCAGCTGCTCCAATATCGCATGCAACTTTCTCATGCGATAGCCAGCTGATATATGCCAGTTTCTTGGACGCAACAATATGTGTATTTAGTGCTTCAAACCTTAGATTACGTTGTCGTATTAATCCTTCTGCATATCTTCAACCCAGTGTCAGCTCGAATGTACAACCGCTTGTGATTGCGGCACATCCACAAGAAGCAAATCAGTTTGCTGTAGGACTGTCAGATGGTGGAGTTCATGTGTTTGAGCCACTTGAGTCAGAGGGCAAGTGGGGTGTGCCTCCGCCCATTGAGAATGGGTCAGCAAGCAATATGGCAGCTACTTCAGTTGGAGCTTCTTCAGATCAAGCCCAAAGATG 3407 0.4262 MSSLSRELVFLILQFLDEEKFKDTVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKSGGFPPLGAHGPFQPTPAPVPMPTPLAGWMSNPTTVAHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPLGISDEVNLPVNVLPATFQGHGHGHGQAFSAPDDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLVSRNFKVWELSACTMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYPGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDTATGAKQYTFEGHEAPVYSVCPHFKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANTDGIRLLRTLENSLYDASRTSEAMAKPTISPISAAAATSAALVERGSSVVSITGMNGDARNLGDVKPRITEESNDKSKIWKLTEINEQIQCRSLKLPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSAGKATASVSPQLWQPSSGILMTNDVTDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKTRFLQLPAGRTPTTQADTRVQFHQDQIHFLVVHETQLAIYETTKLDCLKQWVPRDSAAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLQPSVSSNVQPLVIAAHPQEANQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNMAATSVGASSDQAQR 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02538 1135 SMART WD40_4 915 954 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 408 448 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 1006 1047 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 348 387 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 832 869 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 872 912 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 454 495 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 588 628 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 542 585 IPR001680 GO:0005515
Bva02g02538 1135 SMART WD40_4 498 539 IPR001680 GO:0005515
Bva02g02538 1135 MobiDBLite consensus disorder prediction 1117 1135 - -
Bva02g02538 1135 Gene3D - 839 1108 IPR015943 GO:0005515
Bva02g02538 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 504 IPR001680 GO:0005515
Bva02g02538 1135 SMART Lish 4 36 IPR006594 GO:0005515
Bva02g02538 1135 SUPERFAMILY WD40 repeat-like 358 676 IPR036322 GO:0005515
Bva02g02538 1135 MobiDBLite consensus disorder prediction 1106 1135 - -
Bva02g02538 1135 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1135 - -
Bva02g02538 1135 Pfam WD domain, G-beta repeat 921 954 IPR001680 GO:0005515
Bva02g02538 1135 Pfam WD domain, G-beta repeat 461 495 IPR001680 GO:0005515
Bva02g02538 1135 MobiDBLite consensus disorder prediction 285 308 - -
Bva02g02538 1135 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Bva02g02538 1135 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1135 IPR027728 GO:0006355
Bva02g02538 1135 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Bva02g02538 1135 Gene3D - 551 688 IPR015943 GO:0005515
Bva02g02538 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 637 IPR001680 GO:0005515
Bva02g02538 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 963 IPR001680 GO:0005515
Bva02g02538 1135 SUPERFAMILY WD40 repeat-like 837 1100 IPR036322 GO:0005515
Bva02g02538 1135 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 954 - -
Bva02g02538 1135 ProSitePatterns Trp-Asp (WD) repeats signature. 482 496 IPR019775 -
Bva02g02538 1135 SMART ctlh 34 92 IPR006595 -
Bva02g02538 1135 Gene3D - 335 550 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02538 Bva-Chr2 23951362 23958823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02538 - - gmx:100790282 2093.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02337 08 15119461 15127118 Bva02g02538 02 23951362 23958823 ECH
Bva02g02538 02 23951362 23958823 Bva02g02538 02 23951362 23958823 ECH