Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00939 ATGGCGAGAAGATCCATAACAGCCCTAAAACAACTCTACACAAGATCACAATCCCCCGAAAATCCCAGCATCATCAACAGCCCATGCTCCAGATTCAACCCCAGCCGATTCGTGACCTACATGCCCCGACCCGGTGACGGAGCTCCACGGGCTGTGACCCTTATACCCGGAGATGGGATTGGACCTCTGGTCACTGGCGCCGTCGAACAAGTCATGGACGCGATGCACGCGCCAGTTTACTTCGAAAAGTTTGATGTCAGAGGGGATATGAAGAAAATACCGCAGGAGGTGATCGATTCCATAAGGAAGAACAAAGTGTGCTTGAAGGGTGGCTTGGCTACACCCATGGGCGGTGGTGTGAGCTCCTTGAACCTGCAGCTTAGGAAGGAGCTTGATCTATATGCTTCGCTTGTGAATTGTTGTAACCTTCCCGGCTTGCCCACGAGACATGATAGTGTTAATATTGTTGTGATTAGGGAGAACACGGAGGGTGAATACGCCGGCCTCGAACATGAGGTAGTTCCAGGCGTTGTCGAAAGCCTTAAgGTTATAACGAAGTTCTGTTCAGAGCGCATTGCTAAGTATGCTTTCGAGTATGCATACCTAAATAACAGAAAGAAAGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTGTTCTTGGAATCTTGCCGAGAGGTTGCCAAAAAATATCCCGGAATCATgtataatgaaattattgtCGATAACTGCTGCATGCAACTTGTTTCAAAGCCTGAACAGTTTGATGTCATGGTAACACCGAATCTATATGGAAATCTAGTTGCAAATACAGCAGCAGGTATTGCTGGAGGCACGGGAGTCATGCCAGGAGGTAATGTGGGTGCTGATTATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGATAAAATAGTCgaacaaaagaaagcaaatccAGTGGCTTTGCTCCTCTCATCAGCCATGATGCTTAGACATCTCCAATTTCCATCATTTGCTGATCGATTGGAAACTGCGGTGAAAAAAGTCATACGAGAGGGGAACCACCGGACAAAGGACCTTGGAGGGCAGAGCACCACCCAAGAAGTTGTTGATGTAATCATAGAtgctttaaaata 1139 0.4548 MARRSITALKQLYTRSQSPENPSIINSPCSRFNPSRFVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMDAMHAPVYFEKFDVRGDMKKIPQEVIDSIRKNKVCLKGGLATPMGGGVSSLNLQLRKELDLYASLVNCCNLPGLPTRHDSVNIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIMYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADYAVFEQGASAGNVGNDKIVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIREGNHRTKDLGGQSTTQEVVDVIIDALK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00939 379 Pfam Isocitrate/isopropylmalate dehydrogenase 52 373 IPR024084 -
Bva08g00939 379 SMART Iso_dh_2 51 374 IPR024084 -
Bva08g00939 379 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 48 377 IPR004434 GO:0006099
Bva08g00939 379 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 51 378 - -
Bva08g00939 379 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 21 376 - -
Bva08g00939 379 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 21 376 - -
Bva08g00939 379 Gene3D Isopropylmalate Dehydrogenase 43 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00939 Bva-Chr8 4759432 4762731 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00939 K00030 - csv:101214612 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00939 08 4759432 4762731 Bva11g01415 11 13944941 13948079 BWGD
Bva08g00939 08 4759432 4762731 Bva08g00939 08 4759432 4762731 ECH