LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00279	ATGGATGCCAGAAACTTGTTGcgcttcttctttctttccttcaccCTAGCAATAGCTCTGCTCCTCACCTGGCTTCATTTTCCCTCCCTGCCAGACAAGGCCGAGCTTCTAGACTGCAGCACCAACTCCGGAAGCTGCACCTTCAACTTCAACAAACGTTTTCGACTCAAAAACCCTACTCTTATTAAAAAACCAACAGACCTCCCTCGCCGCCGACACGAATCGGACAAACCTCGCCACCCTCTAGACCCTCTAACGGTCCAAGAAGTCAACAAGGTCCGTGCCATCCTCTCCGCCCATCCTTTGTTCAAGTCCACTTACTCTATCAACTCTCTAGTCCTTGAAGAACCCGACAAAACCTTGGTGCGTGCTTGGAAAAGGGGTGACCCACTCTTACCCAGAAAGGCTTCGGTGATTGCACGTGTGAACGGCGTTGTACACCTGCTCACCGTAGACTTGACTTCCAACCAGGTAACCCGCCATGAAACCGCTCCATTTTCCGGGTACCCGATCACGACGGTTGAAGACATGGTCGGGGCGCTGGATGCACCATTGACCAATGCACAATTTAACCGTACAATCACAGAGCGTGGGGTTGATATGAACGACGTCGCATGCCTTCCAATCTCGCCGGGCTGGTATGGTGAAGCGGAGGAGAATAGGAGGGTGATTAAGGTGCAGTGCTACTCCAGGCAGGGAACCGTGAATTTCTACATGAGACCCATCGAAGGGCTCACCGTGCTTGTTGACTTGGACACAAAGCAAGTCCTGTCGATTTCAGATAAGGGCCGCAACATACCGATACCGGACGGCGTAGACACTGACTATCGCTACTCCGTTCAAAAGCTCAACGGAGTATTAAATCTTGTTAACCCGATATCCATTGAGCAACCCAAGGGTCCGAGTTTCACAATTGATGGGCACTATGTCAAATGGGCAAATTGGGAATTTCACCTAAAACCCGATCCAAGAGCTGGCGCTATCATTTCCCAGGTCAAGGTCCGAGACCCAGAAACATCGGAGCTGAGGGATGTCATGTACAAAGGATTCGTGTCTGAGCTGTTCGTTCCTTACATGGACCCCACGGAAGGCTGGTACTTCAAGACGTATATGGATGCAGGCGAATACGGGTTCGGGTTGCAGGCCATGTCACTGGACCCCCTCAATGATTGTCCCCGGAATGCGTATTACGTGGACGCCGTGTTTGCATCTGCCGATGGAACACCTTACGTCCGACCGAACATGCTTTGCGTTTTTGAGAGCTATGCCGGCGACATTGCGTGGCGACACGCGGAGTGTCCACTCACTGACTTGCAGGTCACTGAAGTAAGGCCAAAGGTGACACTAGTGGTGAGAATGGCAGCTGCCGTAGcaaattatgattatattgTGGATTGGGAGTTCCAAACGGATGGACTAATCAGAAGCAAGGTTGGACTAAGTGGTATTTTGATGGTGAAAGGAAGCAAGTACGAAAATATGAACCAGGCTCCTAATGAATATCTGTATGGCACCCTTCTGAGTGAGAACGTCGTTGGTGTAATCCATGACCATTACATTACATACCGCCTTGACATGGACATCGATGGCTCTGATAATTCCTTTGTAAAGGTAGATATCAAAAAGCAAGAGACGGCGGCGGGAGAGTCGCCCAGAAAGAGCTACTTGAAAGCTGTCAAGAATGTGGCTAAGACAGAAAAAGATGCCCAAATAAGGCTTCAACTATATAACCCCTCTGAATTTCATGTAATAAACCCGTCCAAGAAGACACGGGTCGGGAATTCAGTCGGGTACAAAGTCGTGCCGGGTCCCCAAGCGGCCAGCTTGATGGATCCAGAAGATCCGCCACAGAAGCGGGGTGCTTTCACTGACAACCAAATATGGGTCACTCCTTATAACCGGAGCGAACAATGGGCCGGTGGACTATTCGTTTACCAGAGCAGGGGTGATGATACTCTTCAAGTGTGGTCCGATAGGGATCGTCCAATTGAGAATAAGGACATTGTGGTGTGGTACACGGCAGGATTTCATCACATACCATGCCAGGAGGATTACCCCATAATGCCAACGGTGTCGTCAAGCTTCGATCTCAAGCCtgttaatttctttgagaaaAATCCAATTCTAAGATTGCCCCCTAACTTTGAGACTGATTTACCTGTTTGCAAGCCTCCAGATTCTGCTTG	2186	0.4876	MDARNLLRFFFLSFTLAIALLLTWLHFPSLPDKAELLDCSTNSGSCTFNFNKRFRLKNPTLIKKPTDLPRRRHESDKPRHPLDPLTVQEVNKVRAILSAHPLFKSTYSINSLVLEEPDKTLVRAWKRGDPLLPRKASVIARVNGVVHLLTVDLTSNQVTRHETAPFSGYPITTVEDMVGALDAPLTNAQFNRTITERGVDMNDVACLPISPGWYGEAEENRRVIKVQCYSRQGTVNFYMRPIEGLTVLVDLDTKQVLSISDKGRNIPIPDGVDTDYRYSVQKLNGVLNLVNPISIEQPKGPSFTIDGHYVKWANWEFHLKPDPRAGAIISQVKVRDPETSELRDVMYKGFVSELFVPYMDPTEGWYFKTYMDAGEYGFGLQAMSLDPLNDCPRNAYYVDAVFASADGTPYVRPNMLCVFESYAGDIAWRHAECPLTDLQVTEVRPKVTLVVRMAAAVANYDYIVDWEFQTDGLIRSKVGLSGILMVKGSKYENMNQAPNEYLYGTLLSENVVGVIHDHYITYRLDMDIDGSDNSFVKVDIKKQETAAGESPRKSYLKAVKNVAKTEKDAQIRLQLYNPSEFHVINPSKKTRVGNSVGYKVVPGPQAASLMDPEDPPQKRGAFTDNQIWVTPYNRSEQWAGGLFVYQSRGDDTLQVWSDRDRPIENKDIVVWYTAGFHHIPCQEDYPIMPTVSSSFDLKPVNFFEKNPILRLPPNFETDLPVCKPPDSA	728

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00279	728	Pfam	Copper amine oxidase, N3 domain	170	269	IPR015802	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	SUPERFAMILY	Amine oxidase catalytic domain	288	718	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	Pfam	Copper amine oxidase, N2 domain	80	161	IPR015800	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	Pfam	Copper amine oxidase, enzyme domain	294	708	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	SUPERFAMILY	Amine oxidase N-terminal region	168	277	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	PANTHER	COPPER AMINE OXIDASE	55	724	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	MobiDBLite	consensus disorder prediction	64	83	-	-
	Bva08g00279	728	ProSitePatterns	Copper amine oxidase copper-binding site signature.	673	686	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	Gene3D	Copper amine oxidase, catalytic domain	267	722	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	Gene3D	-	79	170	-	-
	Bva08g00279	728	PANTHER	AMINE OXIDASE-RELATED	55	724	-	-
	Bva08g00279	728	SUPERFAMILY	Amine oxidase N-terminal region	78	164	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Bva08g00279	728	Gene3D	-	171	265	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00279	Bva-Chr8	1345271	1348151	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00279	K00276		-	gmx:100798399	1141.72

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g01186	11	12779243	12784154	Bva08g00279	08	1345271	1348151	BWGD