Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02898 ATGGCTAACAATGCAGCAGCCTGTGCTGAGAGGGCGACTAGTGACATGCTGATTGGTCCAGACTGGGCAATTAATATCGAGTTATGTGATATCATTAATATGGACCAAAGGCAGGCCAAGGATGCCTTGAAGATACTTAAGAAGCGTTTGGGCAGTAAAAACCCCAAAATACAACTTCTGGCTCTTTTTGCACTGGAGACCCTCAGTAAAAATTGTGGTGAAAATGTTTTTCAGCAGATCATTGAGCGAGAAATATTACCTGATATGGTTAAGATAGTTAAGAAGAAGCCGGACTTAAATGTGAGGGAAAAGATACTGATTCTAATTGATATGTGGCAAGAAGCATTTGGAGGTCCGAGTGGAAAGTATCCCCAGTACTATGCAGCATATAATGAACTAAAGTCCTATGGAGTTGATTTTCCGCCACGTGAGGAGAATAGTGTTCCGTTCTTCACCCCACCTCAAACCCAACCAATTGAACATGCTGCAACATACGATGATGCTGCTGCTGCTATTCCTACTTCTCTCCAGTCGGATGCTTCTGTCCTTAGTTTACCAGAGATTCGAAATGCTCAAAGTTTAGCAGATGTCCTGATGGAAATGCTTGGTGCCTTGGATCCTAAAAATCCTGAGGGTGTGAAGGAAGACGTGATTGTTGACCTTGTTGACCAGTGCCATTCTTACCAAAAGCGTGTCATGGTGCTGGTGAACAATACTGcGGATGAGGAGCTTTTATGTCAGGGGTTGGCACTGAATGACAGCCTGCAGCGAGTACTTCGTCGACATGACGATATTGTAAAAGGGACCCCTAATCCAGTTGCTAGAGAAAGGGAAACTTCTGTTCTGCCACTAGTGAATGTAAACCATGAGGATGATGAATCAGAAGATGATTTTGCACAGTTGGCTCACAGGTCATCAAGAGATAATCATGCACGCAATCGGAAACCAGCCAATGACAAGGCAGAACCACTGAGAGTAAACCCACTTCTTCCTCCTCCACCAGCTCCCAGGAAGCCTGTCTTCTCTGACACCGGGATGGTTGATTATCTCAGTGGTGATGCGTACAAAGCAGAGGGGCCCCCTGAAAACTCGAAAGAAACTTCATTTACAGTTCCACATCATTCCAGTCCAAATCCTACCTCATCAACTCCAACGTGGTCTTCCTCACCTCCTCCTCGTGGCGTGGATACATCGCCTGGTTTCAACAGAGAACCTATTTATGACGAACCATCTCCCATGAGCAAGTCTTCGGAAAGCCTGCCTCCAGCTCCCTGGGACACACAAGCTCCTGGTATCCTCCCGCCCCCACCTTCAAGACGTAACCAAAGACAACAGTTTTTTGAGCAACAAGGTACATCAGATCCAAGTAGTGGATCTTCCGCTTATGATAGCCTGGTGGGACAAACCCAGAATCTGTCCCTTGATTCGTCTACCCcaaccaaacaaaagaagCCAGAGGATGCTCTTTTCAAAGATCTAGTTGATTTTGCAAAATCTAAGACCTCTTCATCTTCCAAACCTAATCGGTCGTTTTG 1535 0.4521 MANNAAACAERATSDMLIGPDWAINIELCDIINMDQRQAKDALKILKKRLGSKNPKIQLLALFALETLSKNCGENVFQQIIEREILPDMVKIVKKKPDLNVREKILILIDMWQEAFGGPSGKYPQYYAAYNELKSYGVDFPPREENSVPFFTPPQTQPIEHAATYDDAAAAIPTSLQSDASVLSLPEIRNAQSLADVLMEMLGALDPKNPEGVKEDVIVDLVDQCHSYQKRVMVLVNNTADEELLCQGLALNDSLQRVLRRHDDIVKGTPNPVARERETSVLPLVNVNHEDDESEDDFAQLAHRSSRDNHARNRKPANDKAEPLRVNPLLPPPPAPRKPVFSDTGMVDYLSGDAYKAEGPPENSKETSFTVPHHSSPNPTSSTPTWSSSPPPRGVDTSPGFNREPIYDEPSPMSKSSESLPPAPWDTQAPGILPPPPSRRNQRQQFFEQQGTSDPSSGSSAYDSLVGQTQNLSLDSSTPTKQKKPEDALFKDLVDFAKSKTSSSSKPNRSF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02898 511 PANTHER TOM1-LIKE PROTEIN 4 1 511 - -
Bva06g02898 511 Pfam VHS domain 9 135 IPR002014 GO:0035091|GO:0043130
Bva06g02898 511 MobiDBLite consensus disorder prediction 296 321 - -
Bva06g02898 511 MobiDBLite consensus disorder prediction 363 395 - -
Bva06g02898 511 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Bva06g02898 511 CDD VHS 10 135 - -
Bva06g02898 511 MobiDBLite consensus disorder prediction 438 479 - -
Bva06g02898 511 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Bva06g02898 511 SUPERFAMILY GAT-like domain 145 268 - -
Bva06g02898 511 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Bva06g02898 511 CDD GAT_GGA_like_plant 187 265 - -
Bva06g02898 511 PIRSF TOM1 1 511 IPR014645 -
Bva06g02898 511 Pfam GAT domain 193 268 IPR004152 GO:0035091|GO:0043130
Bva06g02898 511 PANTHER TOM1-LIKE PROTEIN 1 511 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bva06g02898 511 Gene3D - 2 158 IPR008942 -
Bva06g02898 511 Gene3D - 182 273 IPR038425 -
Bva06g02898 511 MobiDBLite consensus disorder prediction 287 487 - -
Bva06g02898 511 ProSiteProfiles GAT domain profile. 179 267 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02898 Bva-Chr6 18111388 18116201 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02898 - - gmx:100792343 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00204 10 3331925 3338427 Bva06g02898 06 18111388 18116201 BWGD
Bva06g02898 06 18111388 18116201 Bva06g02898 06 18111388 18116201 ECH