Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02294 ATGGACTTACCAGAACAGGACCAGACTCATTCCTGTCCCAAGCGAACCTTCGATGAGATAAACTCTAAAGCTGACTGTACGAATGATTGCTCAATTCAAAAGTCTCCATTTTCCAAGAAAACCAAACATTTTGACCTCCAAGGGTATCAATTAGAGGTGTTTGAAGCCGCAAGGAGGAGGAACACAATAGCGGTATTGGATGCAGGGTCGGGTAAGACCTTTGTAGTCGTCATGCTAATCAAAGACATTGGGCAAGCTATCAAGGCTAGTGGCGTAAAAAAGTTGATTGTTTTCTTAGCTCCCACCGTTCATCTTGTCAATCAGCAATTTAAGGagataaaagaatatacaaaGTTTGAAGTTGAGGAATACTATGGGGCAAAAGGAGTTGATGATTGGAATTTAGAGAGATGGGAGAAGGAGATTAGCGAACATGATATACTGGTTATGACACCCCGGATTCTCTTGGATGTCTTGAGAAAGGCATTcctgaaaatagaaaaaatatgcTTGATGATTATTGATGAGTGCCATAGAGCGACTGGAAACCACCCCTATGCACAAATAATGAAGGAATTCTATCACGAAGCTAATGAAAAGCCGAAGATCTTTGGGATAACAGCATCACCGCTAGTTAATAAAGGTGTTTCCTATACCATGGATTGTGATTGTCAAATTTCTAAACTTGAAAGCATCTTGGACTCCCAGGTATATCCATCTGCCAAAGTGAGTTATAGATATTATGACCAGGCACAGCTTCCTGCAATGAGTTTGAAGCCAAATATTGAAGCCTTATGGTCCAAGttggatgattcattgTTAGAATTGCAAAGATCCGTGCAAATAAACTGTGAAGACatgaacaataaatttaaggcACTGCATAAGTGTATGACCAATGAACTTGCAGAAATTTTGTATTGCCTTGAAGATCTCGGACTCTTGTGTGCTTATGAGGCTGTTAAAATCAGTCTTGAGAATTTCTCTAACATTGAAGAAGATTGTGAAGTTTACagaaaaatttctttggagtataaattattacttGAAAAAGTGTTGCAAATAATTGGAGAGCGTCTACCATTTGCTGATAGGAGTCTTTTGGAgcttgaatttaatttattagatgCAGCAGATTTGGGATACATATCTCCAAAGTTACTGGAACTTATTAAAATCTTCCAATCTTTTGGAGAATCTAGCCAAGTGCTTTGCCTTATCTTTGTTGAAAGAATCATTACTGCAAGGGTGGTTGAAAGATTTGTGAAGAAAGTTTCCTGCCTATCTCATTTCACAGTTACATATTTAACTAGAAGCAATACATTGGTTGGTGCACATTCCCCAAAGAAGCAGAAAGATACCATGAATCCATTCTGCTGTGGACAGGTCAACTTGTTATTTACCACTGACGTTGTTGAGGAGGGTATCCATGTGCCAAATTGCTCTTATGTCATACGATTTGACCTACCCAAGACTGTTCCTAGTTATGTCCAATCTCAGGGGCAAGCTAGGCAAGATGACTCccaatttattttgatgttggAGAGGGGCAACTTGAAGCAAAGAAATCAACTGTTTGACATTATCAGGAGTAAGCATTTGTTGACTGAAGCAGCTATTAGCAGAGACCCTGGTGCTTCTATTTCAACGGCTTGTGCAGTAGACAAAGCAAATACATACTGTGTGGATTCTACTGGAGCATCAGTCACTTCAGATAATAGCATTTCTCTTATATATCAATATTGTGACAAGATTGGTAGAGATAAgaAGGATGCAAAGCCAATATTTGAGATTTTGCCCAGCGGAGGGAGTTGCAAGTGTAAACTAACATTACCTCCTAATGGGGCTTTCTTGAGCAGAAATAACCATTTAGCAAAGCAGCTTGTTTGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCTTTAAATGATCATCTTCTCCCATCCCTTCAACCTTCAGAAAATGATCGTATTTCGAACAAAAAGCAATCAAACTCAGGAACCACAAAAAGGAAGGAGTTACATGGCACAGCCAGCATTCGCGCTTTGTGCGGGACTTGGGCAGATAAACCCAATGGCATTATGTTTTATGCctataaatttgatttcacCTGTAATATTGTTAGTGAAATTTACTCTGGGTTCACTCTTCTGATAGAATCAAAGCTTGATGATGATGTTGGCAATATTGAATTAGAACTGTACTCGAGATCAAAGATTGTGAAAACTTGTGTCTCTTCATGTGGGCAGCTGTATTTGGATGCTGATCAGGTTATAAAAGCAAAATGCTTCCATGAACTTTTCTTCAATGGTTTGTTTGGGAAGTTATTTGTGTGGTCCAAAGCGGCAGAAGGAAAACAACGGGAGTTTTTACTTCAGAAAGACACAAGATCTTTGTGGAACCCGTCAAACTTGTATTTTCTTCTACCACTTAAGAAGTTGAATGATATTTGTGAAGAATCTTGGAAAGTAAATTGGACAGCAATGAATTCTTGTGCTTCTGCCATTGAATTTGTAAGAAAGAAGTCTTTGTTGGGTGCTGGACATTGTGTGGATGACAGAAATATCTCATTACCTTGTAATACAAGTTCATCAGAGACAGAATGCAAAGCCACAAAAACGATTTGCTTTGCTAACTGTGTTGTTGATGTTAACAATCTCAAAGATATGGTGGTTTTAGCCATACATAATGGAAGAGTATACTGTGTTATTGAGGTTGCTGATGATTTATTTCCTGGAAGTCCTTTTGATGGAATCAATATGAAGTCAGCCACAACTGAGCATACGACCTTCTCTGATTATTATGGCAAAAGGTATGGAATTGTGCTGAGATATCCAGAACAGCCTTTGCTTCGTTTGAAGCAAAGTCATAACGCGCACAACCTTCTTATGAACTTCAGTGAGGAAGATGGTTGTAACAAGGCATTGCAACCGGCAATTCAGAAAGCACAAGCACATGTTCACATTCCAGCTGAGCTTCTATACATGCTTGATGTTCGAAGAGATGTGTTGAAGTCACTTTATTTACTACCATCACTTATGCACCGCCTCGAATCTCTTATGTTAGCGAGCCAGCTTAGAGCAGAGATAGATGGTCAAAGCAGCAACTTTAGCGTACCCAGTTCTATGATTCTAGAAGCGCTCACAACTTTAAGATGTACTGAAAACTTTTCATTGGAACGTCATGAGTTGCTTGGAGATTCTGTCCTCAAGTGTGCTGTGAGTTGTTGTCTCTTTCTTAAGAATCCAGATAAACATGAAGGGCAACTATCTGCCAGACGCTCACAGGCTGTTTGTAATTCAACCTTACATCAACTCGGTATAAATCGCACATTACAGGGATATATCCGCGAGTCTGCATTTGACCCACGCCGTTGGGTTGCTCCAGGACAGTGTTGTATACACACTGTTCCTTGTAAATGTGGGGTGGAATCCCCTGAAGTGCCTTTAGATGAGAAGTTTCAAACTGAAGATCCATCTGTTGTAATTGGGAAGGTATGTGACAGAGGTCACCGGTGGATATGTTCAAAGACCATCGCTGATTGTGTTGAAGCTCTGATAGGTGCATACTATGTTGGTGGTGGACTGGTCGCTTCACTTCATGTGATGAAGTGGCTCCAAATTGATGCTGAACTTGACCAATCCTTGGTACATAAAGCAATTACTACTGCGTCTCTCCACACCTATGTACCAAAAGGAAATGAGATTGCAAGccttgaagaaaaattaggataTGAATTTTCGGTCAAGGGACTCTTACATGAGGCAATGACACATTTCTCTGGACAAGAACCTGGTATTGGCTACTGCTACGAGAGGCTTGAATTTCTCGGAGACTCAGTACTGGACCTGCTTATCACATGGCATCTTTATCAGAGCTACCCAGACATTGACCCGGGAGAATTAACAGACTTGCGCTCTGCATCTGTAAATAATGACAATTTTGCTCAAGCTGCAGTTAGGCGAAACCTTCAACAGCATCTTGTGCATAACTCTGAACTTTTACGAAGCCAAATAGCAGAATATGTAAAGGTCATATCTGAATTGGACAGCACTACCAAATCACTCCCAGGCACTAAGGGTCCAAAGGCACTTGGAGATCTGGTAGAAAGTATTGCAGGGGCTGTACTACTTGATACCAAGCTCAATCTTGATCAAGTgtggaaaatatttaaacctCTGTTATCTCCGATTGTTACTCCTGATAATCTTCAACTGCCTCCACTTCGTGAACTGTACGAGTTATGTGACTCTCACGGCTATTTTGCAAAAGAAACTTGTACAAGGACGCAACTCATGGTGCATGCCGTGATTACTTTACAGCTGGAAGACGAGCTGTTGGTTCGAAATGGACAGggtccaaataaaaaaatggcaaaagCAGAAGCTGCTTTCCATTTGTTGAAGGAACTCGAGagGAGAGGAATttccaagaaaagaagagataatcttgatcatatacatatacattccTCAGAGCCAATAATACATAAAAAGCCCAAAGTGGATGAAACCAACATTTTGTCTCCCAAGGACGCTTCAATGGAAGTTCGTGATCCCAGTATTGCTGCCACAGTTACTATAACAATCAATACGAAGAAGGGTGGACCTCGGGCCACTCTGCATGAACTCTGTAAGAGGCTGCAGTGGCCAATGCCAAAATATGACGCAACAGAATACAGACAAAAAACTGCATTTGAATTTGGCCAAGGCTCGGAAACAAGAACAGGATATCTCTGCTTTGTGTCAAAAGTAACTTTGTGCATACCCAATGATGGTTCTATCGATTGCAAAGGAGATGCTAGAGCTGATAAGAAGAGTGCATTTGACTCCGCCGCCGTTGCATTGCTTTATGAGCTACAACGACTGGGAAAACTCAACATTGCTGATTCCTA 4898 0.3889 MDLPEQDQTHSCPKRTFDEINSKADCTNDCSIQKSPFSKKTKHFDLQGYQLEVFEAARRRNTIAVLDAGSGKTFVVVMLIKDIGQAIKASGVKKLIVFLAPTVHLVNQQFKEIKEYTKFEVEEYYGAKGVDDWNLERWEKEISEHDILVMTPRILLDVLRKAFLKIEKICLMIIDECHRATGNHPYAQIMKEFYHEANEKPKIFGITASPLVNKGVSYTMDCDCQISKLESILDSQVYPSAKVSYRYYDQAQLPAMSLKPNIEALWSKLDDSLLELQRSVQINCEDMNNKFKALHKCMTNELAEILYCLEDLGLLCAYEAVKISLENFSNIEEDCEVYRKISLEYKLLLEKVLQIIGERLPFADRSLLELEFNLLDAADLGYISPKLLELIKIFQSFGESSQVLCLIFVERIITARVVERFVKKVSCLSHFTVTYLTRSNTLVGAHSPKKQKDTMNPFCCGQVNLLFTTDVVEEGIHVPNCSYVIRFDLPKTVPSYVQSQGQARQDDSQFILMLERGNLKQRNQLFDIIRSKHLLTEAAISRDPGASISTACAVDKANTYCVDSTGASVTSDNSISLIYQYCDKIGRDKKDAKPIFEILPSGGSCKCKLTLPPNGAFLSRNNHLAKQLVCLEACKKLHQMGALNDHLLPSLQPSENDRISNKKQSNSGTTKRKELHGTASIRALCGTWADKPNGIMFYAYKFDFTCNIVSEIYSGFTLLIESKLDDDVGNIELELYSRSKIVKTCVSSCGQLYLDADQVIKAKCFHELFFNGLFGKLFVWSKAAEGKQREFLLQKDTRSLWNPSNLYFLLPLKKLNDICEESWKVNWTAMNSCASAIEFVRKKSLLGAGHCVDDRNISLPCNTSSSETECKATKTICFANCVVDVNNLKDMVVLAIHNGRVYCVIEVADDLFPGSPFDGINMKSATTEHTTFSDYYGKRYGIVLRYPEQPLLRLKQSHNAHNLLMNFSEEDGCNKALQPAIQKAQAHVHIPAELLYMLDVRRDVLKSLYLLPSLMHRLESLMLASQLRAEIDGQSSNFSVPSSMILEALTTLRCTENFSLERHELLGDSVLKCAVSCCLFLKNPDKHEGQLSARRSQAVCNSTLHQLGINRTLQGYIRESAFDPRRWVAPGQCCIHTVPCKCGVESPEVPLDEKFQTEDPSVVIGKVCDRGHRWICSKTIADCVEALIGAYYVGGGLVASLHVMKWLQIDAELDQSLVHKAITTASLHTYVPKGNEIASLEEKLGYEFSVKGLLHEAMTHFSGQEPGIGYCYERLEFLGDSVLDLLITWHLYQSYPDIDPGELTDLRSASVNNDNFAQAAVRRNLQQHLVHNSELLRSQIAEYVKVISELDSTTKSLPGTKGPKALGDLVESIAGAVLLDTKLNLDQVWKIFKPLLSPIVTPDNLQLPPLRELYELCDSHGYFAKETCTRTQLMVHAVITLQLEDELLVRNGQGPNKKMAKAEAAFHLLKELERRGISKKRRDNLDHIHIHSSEPIIHKKPKVDETNILSPKDASMEVRDPSIAATVTITINTKKGGPRATLHELCKRLQWPMPKYDATEYRQKTAFEFGQGSETRTGYLCFVSKVTLCIPNDGSIDCKGDARADKKSAFDSAAVALLYELQRLGKLNIADS 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02294 1632 Pfam Helicase conserved C-terminal domain 399 503 IPR001650 -
Bva06g02294 1632 Pfam Dicer dimerisation domain 574 650 - -
Bva06g02294 1632 ProSitePatterns Ribonuclease III family signature. 1273 1281 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 ProSiteProfiles Ribonuclease III family domain profile. 1024 1196 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 Gene3D - 376 529 IPR027417 -
Bva06g02294 1632 Gene3D paz domain 871 997 - -
Bva06g02294 1632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 546 IPR001650 -
Bva06g02294 1632 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 37 1626 - -
Bva06g02294 1632 SUPERFAMILY RNase III domain-like 1236 1401 IPR036389 GO:0004525|GO:0006396
Bva06g02294 1632 Pfam Ribonuclease III domain 1061 1195 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 Pfam Ribonuclease III domain 1273 1381 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 Gene3D Ribonuclease III domain 1034 1210 IPR036389 GO:0004525|GO:0006396
Bva06g02294 1632 Gene3D Ribonuclease III domain 1214 1402 IPR036389 GO:0004525|GO:0006396
Bva06g02294 1632 ProSiteProfiles PAZ domain profile. 887 970 IPR003100 GO:0005515
Bva06g02294 1632 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1452 1474 IPR014720 -
Bva06g02294 1632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 521 IPR027417 -
Bva06g02294 1632 CDD RIBOc 1045 1207 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 SUPERFAMILY PAZ domain 885 999 IPR036085 GO:0005515
Bva06g02294 1632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 214 IPR014001 -
Bva06g02294 1632 Gene3D - 1408 1475 - -
Bva06g02294 1632 PANTHER DICER-RELATED 37 1626 - -
Bva06g02294 1632 CDD RIBOc 1253 1405 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 SMART helicmild6 430 506 IPR001650 -
Bva06g02294 1632 MobiDBLite consensus disorder prediction 649 666 - -
Bva06g02294 1632 Gene3D Dicer dimerisation domain 569 660 IPR038248 -
Bva06g02294 1632 Gene3D - 40 265 IPR027417 -
Bva06g02294 1632 SMART riboneu5 1252 1405 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 SMART riboneu5 1043 1216 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 CDD DEXHc_dicer 48 239 - -
Bva06g02294 1632 Pfam PAZ domain 886 1019 IPR003100 GO:0005515
Bva06g02294 1632 SUPERFAMILY RNase III domain-like 1043 1210 IPR036389 GO:0004525|GO:0006396
Bva06g02294 1632 Pfam DEAD/DEAH box helicase 49 194 IPR011545 GO:0003676|GO:0005524
Bva06g02294 1632 ProSiteProfiles Ribonuclease III family domain profile. 1237 1382 IPR000999 GO:0004525|GO:0006396
Bva06g02294 1632 SMART PAZ_2_a_3 859 1023 IPR003100 GO:0005515
Bva06g02294 1632 MobiDBLite consensus disorder prediction 649 674 - -
Bva06g02294 1632 SUPERFAMILY dsRNA-binding domain-like 1409 1484 - -
Bva06g02294 1632 Gene3D - 1543 1623 - -
Bva06g02294 1632 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 574 657 IPR005034 GO:0016891
Bva06g02294 1632 SMART ultradead3 42 246 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02294 Bva-Chr6 14882333 14896076 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02294 K11592 - gmx:100806831 2011.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02294 06 14882333 14896076 Bva06g02294 06 14882333 14896076 ECH
Bva06g00473 06 5426261 5436676 Bva06g02294 06 14882333 14896076 ECH
Bva05g01161 05 6001311 6012414 Bva06g02294 06 14882333 14896076 ECH