Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01396 ATGAAGGCAACACTGAGATACTTAGCAGGAATTGCAGGCCCTAGTGGTTTTGGCTCAAATACAACAGCCGAGCAAGTTACACAAGATTGTTCTTCCTTGCTTCCTTCCCATCTAACTGCTGTGGTTACTGGAGCGACTTCTGGCATTGGAGCTGAAACAGCGAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCAAGGGATTTGAAGAAGGCAAGACGAGTTAGAGAGAATATCCATAAAGAGACTCCAAATGCTGAGGTTGTCCTGTTGGAGATTGATCTCAGCTCTTTTGCCTCCGTACAGAGATTTTGTTCTGAGTTTTTAGCTCTTGGGCTACCCCTCAATATCCTCATAAACAATGCTGGAATGTTCTCTCAGAAATTGGAGTTCTctgaagagaaaattgagaTGACAATTGCCACAAATTACTTAGGGCATTTTTTGTTGACGGAAATGCTATTAGAGAAAATGATAGGGACAGCAGAGATGACAGGATTTCAAGGGAGAATAATAAACGTATCTTCAGTAATACACGGCTGGGTCAAGAGagatgcttttcttttcaacgACATGCTCAACGGAAAAAATTATAATGGCACACGTGCATATGCTCAATCAAAATTGGCCAATATTTTGCATGCGAAGGAAATCGCTAGACAGCTAAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTCCATCCAGGTATCGTGAAGACGGGAATCATTAGAGCTCATAAAGGCTTGTTAACAGattctcttttcttcatcgCATCCAAGTTACTCAAATCGATATCTCAGGGTGCATCAACGACGTGTTATGTTGCTCTGAGCCCACAGACAGAAGGGGTCAGTGGGAAATACTTCGCAGATTGTAACGAGAATAACTGCTCAAGTCTAGCAAATGACGAGTCAGAAGCACAAAAGCTATGGATAAACACCCGTGCATTGCTTCACAAACGATTATGCCAAGCCGCAACATG 992 0.4083 MKATLRYLAGIAGPSGFGSNTTAEQVTQDCSSLLPSHLTAVVTGATSGIGAETARVLAKRGVRVVIAARDLKKARRVRENIHKETPNAEVVLLEIDLSSFASVQRFCSEFLALGLPLNILINNAGMFSQKLEFSEEKIEMTIATNYLGHFLLTEMLLEKMIGTAEMTGFQGRIINVSSVIHGWVKRDAFLFNDMLNGKNYNGTRAYAQSKLANILHAKEIARQLKARNARVTINAVHPGIVKTGIIRAHKGLLTDSLFFIASKLLKSISQGASTTCYVALSPQTEGVSGKYFADCNENNCSSLANDESEAQKLWINTRALLHKRLCQAAT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01396 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Bva06g01396 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Bva06g01396 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Bva06g01396 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 297 IPR036291 -
Bva06g01396 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Bva06g01396 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Bva06g01396 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Bva06g01396 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Bva06g01396 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Bva06g01396 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Bva06g01396 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Bva06g01396 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Bva06g01396 330 Gene3D - 35 325 - -
Bva06g01396 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01396 Bva-Chr6 10319627 10323798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01396 17 294 Acyl Lipid Metabolism Gene Families AT3G46170 24.658 2.91e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01396 - K11153 gmx:100819058 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00343 05 1697764 1700896 Bva06g01396 06 10319627 10323798 BWGD
Bva06g01396 06 10319627 10323798 Bva06g01396 06 10319627 10323798 ECH